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Report for CCDS40975.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
40975.1 Public Mus musculus X Rtl8c 23 108 98 CCDS HistoryNCBI Gene:72865Re-query CCDS DB by CCDS ID:40975.1See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 40975.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000063384.3 ENSMUSP00000069901.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000063384.3Link to Ensembl Protein Viewer:ENSMUSP00000069901.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000063384Re-query CCDS DB by Protein ID:ENSMUSP00000069901
Original member Current member NCBI NM_028375.3 NP_082651.1 Accepted alive Link to Nucleotide Sequence:NM_028375.3Link to Protein Sequence:NP_082651.1Re-query CCDS DB by Nucleotide ID:NM_028375Re-query CCDS DB by Protein ID:NP_082651Link to BLAST:NP_082651.1

Chromosomal Locations for CCDS 40975.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 53608046 53608384 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (339 nt):
ATGGACCGCCGGATTAAGTTGATTATGGCCCTCATGGCCTGGCCCGAGCTGCGTAAAGGCCGTTGGCAGA
ACCCCATCCCATTTCCTGAGCTGTTTGATGGCGAGATGGAGAAGCTCCCGGAGTTCATCGTGCAGACCCT
GTCCTACATGTTAGTAGATGAGAAGACCTTCGACACCGACAAACGCAAGGTGATGTTCCTCATCACCCGC
CTCAAGGGCCGGGCCCTGCAGTGGGCTATGCGCTATCTCCAGACAGACAGCCCCATGCTCAACAATTACT
CCGGCTTCCTGAATGAGATGAAGGAGGAGTTCGGGTGGGAGGAGGATGAGGACTTCTAG

Translation (112 aa):
MDRRIKLIMALMAWPELRKGRWQNPIPFPELFDGEMEKLPEFIVQTLSYMLVDEKTFDTDKRKVMFLITR
LKGRALQWAMRYLQTDSPMLNNYSGFLNEMKEEFGWEEDEDF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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