NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS15955.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15955.1 Public Mus musculus 2 Phf19 23 108 98 CCDS HistoryNCBI Gene:74016Re-query CCDS DB by CCDS ID:15955.1See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 15955.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000028232.6 ENSMUSP00000028232.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000028232.6Link to Ensembl Protein Viewer:ENSMUSP00000028232.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000028232Re-query CCDS DB by Protein ID:ENSMUSP00000028232
Original member NCBI NM_028716.4 NP_082992.1 Updated not alive Link to Nucleotide Sequence:NM_028716.4Link to Protein Sequence:NP_082992.1Re-query CCDS DB by Nucleotide ID:NM_028716Re-query CCDS DB by Protein ID:NP_082992
Current member NCBI NM_028716.5 NP_082992.1 Accepted alive Link to Nucleotide Sequence:NM_028716.5Link to Protein Sequence:NP_082992.1Re-query CCDS DB by Nucleotide ID:NM_028716Re-query CCDS DB by Protein ID:NP_082992Link to BLAST:NP_082992.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_082992.1 578 Q9CXG9 578 100% 0 0

Chromosomal Locations for CCDS 15955.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 34895719 34896061 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 34897057 34897152 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 34898074 34898159 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 34898924 34899011 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 34899583 34899744 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 34901060 34901127 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 34903136 34903256 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 34903352 34903420 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 34904055 34904150 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 34905450 34905598 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 34906458 34906558 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 34907005 34907100 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 34911164 34911245 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 34911617 34911796 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1737 nt):
ATGGAGACTCAAGCTCTGGAACCAGGGACTCTGGAAGCCTTTGGTGCCACCAGTCCTAACAAGGGGGGCC
TGTCTAAGACCAAAAAGAACTTCAAAGACTTGATGTCTAAGGTGACAGAGGGACAGTTCGTGCTATGCAG
GTGGACAGACGGGCTATATTACCTTGGCAAGATCAAGCGGGTCAGCAGTCCTAAGCAAAGCTGCCTTGTG
ACTTTTGAAGATAATTCCAAATACTGGGTCCTGTGGAAGGACATCCAGCATGCTGGTGTTCCGGGAGAGG
AGCCCAAGTGTGACGTCTGCATGGGGAAGACTTCAGGGCCTATGAACGAGATCCTCATCTGTGGGAAGTG
TGGCCTGGGTTACCACCAACAGTGCCACATCCCCATCGCAGTTGATGCCAACTGGCCCCTCCTCACTCAT
TGGTTCTGCCGACGCTGCATTTTCGCACTGGCTGTGAGGAAAGGTGGCGCTTTGAAGAAAGGCGCCATCG
CCAAGACGCTGCAGGCAGTGAAAATGGTGCTGTCCTACCAGCCGGAGGAACTCGATTGGGACTCGCCCCA
TCGCACTAACCAGCAGCAATGCTACTGCTACTGCGGCGGGCCTGGAGAGTGGTACCTTCGGATGCTACAG
TGCTACCGGTGTAGGCAGTGGTTCCATGAGGCTTGCACACAGTGCCTTAGTGAGCCTATGGTGTTTGGAG
ACCGCTTCTACCTGTTCTTCTGCTCCGTGTGTAACCAAGGCCCAGAGTATATTGAGAGGCTGCCCTTGCG
ATGGGTGGATATAGTTCACCTGGCTCTCTATAACTTGGGAGTACAGAGCAAGAAGCGGTACTTTGACTTT
GAGGAGATCCTGGCCTTTGTCAACCATCACTGGGAGCTCCTGCAGCTTGGCAAGCTCACCAGCACCCCCA
TGACAGAACGAGGGCCACATCTCCTCAACGCTCTCAACAGTTACAAGAGCCGGTTCCTGTGTGGCAAGGA
AATTAAGAAGAAGAAATGCATCTTCCGACTGCGCATCCGAGTCCCGCCTGCCCCTCCAGGAAAACTGCTT
CCCGACAGGGCGTTGATGCCAAGTGACAAAGGGACCTCCGAGCTGCTTCGTAAGAAAGGAAAGAGCAAGC
CTGGTTTGTTGCCTCAGGAACCCCAGCAGCAGAAAAGGCGAGTTTATAGAAGAAAAAGATCAAAGTTTTT
GCTGGAAGATGCTATTCCCAGTAGTGACTTCACCTCAGCCTGGAGCACAGACCACCACCTAGCCAGTATA
TTCGACTTCACACTGGATGAAATTCAGAGTTTAAAAAGTGGCAGCTCAGGCCAGACCTTCTTCTCAGATG
TGGATTCTACCGACGCAGCCAGCACCTCGGGGTCTGCCTCCACCAGCCTCTCCTACGACTCCAGATGGAC
GGTAGGCAGCCGCAAGAGGAAGCTGACAGCCAAAGTGCACAGGCCCCTGCGAGCAAAGCAAAGGGCGGCG
GAGCTGGAGGGGCGCTGCGCCTCAGACAGCAATGCAGAGGGAGCTGTGGGTCCTGAGCAGCCGGATGAAG
GCATCGACAGCCACACACTTGAAAGCATCAGTGGAGACGACTCGTCCCTGTCCCACCTCAAGTCCTCTAT
CACCAACTACTTTGGTGCAGCTGGGCGGTTGGCCTGCGGGGAAAAATATCGGGTGTTGGCGCGGAGGGTC
ACTCCAGAAGGCAAGGTTCAGTACCTGTTGGAATGGGAGGGGACCACCCCTTACTGA

Translation (578 aa):
METQALEPGTLEAFGATSPNKGGLSKTKKNFKDLMSKVTEGQFVLCRWTDGLYYLGKIKRVSSPKQSCLV
TFEDNSKYWVLWKDIQHAGVPGEEPKCDVCMGKTSGPMNEILICGKCGLGYHQQCHIPIAVDANWPLLTH
WFCRRCIFALAVRKGGALKKGAIAKTLQAVKMVLSYQPEELDWDSPHRTNQQQCYCYCGGPGEWYLRMLQ
CYRCRQWFHEACTQCLSEPMVFGDRFYLFFCSVCNQGPEYIERLPLRWVDIVHLALYNLGVQSKKRYFDF
EEILAFVNHHWELLQLGKLTSTPMTERGPHLLNALNSYKSRFLCGKEIKKKKCIFRLRIRVPPAPPGKLL
PDRALMPSDKGTSELLRKKGKSKPGLLPQEPQQQKRRVYRRKRSKFLLEDAIPSSDFTSAWSTDHHLASI
FDFTLDEIQSLKSGSSGQTFFSDVDSTDAASTSGSASTSLSYDSRWTVGSRKRKLTAKVHRPLRAKQRAA
ELEGRCASDSNAEGAVGPEQPDEGIDSHTLESISGDDSSLSHLKSSITNYFGAAGRLACGEKYRVLARRV
TPEGKVQYLLEWEGTTPY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH