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Report for CCDS27909.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27909.1 Public Mus musculus 16 Zfp263 23 108 98 CCDS HistoryNCBI Gene:74120Re-query CCDS DB by CCDS ID:27909.1See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 27909.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000023176.4 ENSMUSP00000023176.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000023176.4Link to Ensembl Protein Viewer:ENSMUSP00000023176.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000023176Re-query CCDS DB by Protein ID:ENSMUSP00000023176
Original member Current member NCBI NM_148924.3 NP_683726.2 Accepted alive Link to Nucleotide Sequence:NM_148924.3Link to Protein Sequence:NP_683726.2Re-query CCDS DB by Nucleotide ID:NM_148924Re-query CCDS DB by Protein ID:NP_683726Link to BLAST:NP_683726.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_683726.2 680 Q8CF60 680 100% 0 0

Chromosomal Locations for CCDS 27909.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 3744375 3744767 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 3745777 3745957 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 3746422 3746495 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 3746771 3746894 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 3748149 3748265 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 3748712 3749865 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2043 nt):
ATGACTATGGCTGCGGGCCCAAGCTCGCAGGAGCCAGAAGGGCTCCTCATAGTGAAACTGGAGGAGGACT
GTGCCTGGAGCCACGAGGTACCCCCGCCTGAGCCAGAGCCCAGCCCGGAGGCCTCCCATCTGCGATTTCG
ACGGTTCCGCTTTCAGGACGCCCCGGGTCCCCGGGAGGCCCTTAGCCGGCTTCAGGAGCTTTGCCGCGGG
TGGCTGCGGCCGGAGATGCGCACCAAGGAACAGATCCTGGAGCTGTTGGTGCTGGAGCAGTTCTTGACTA
TCCTTCCCCAGGAGATTCAGAGCAGGGTGCAGGAGCTGCGCCCAGAGAGCGGCGAAGAAGCAGTCACTCT
TGTGGAGCGTATGCAGAAAGAACTTGGGAAACTGAGGCAACAGGTCACAAACCAAGGGCGGGGAGCAGAA
GTGCTTTTGGAGGAGCCTTTGCCACTGGAAACAGCAGGAGAGTCACCGAGCTTCAAGCTGGAGCCAATGG
AGACTGAGCGAAGCCCTGGCCCCAGGCTGCAGGAGCTGCTAGACCCCAGCCCCCAAAGGGACTCCCAGGC
TGTAAAGGAGAGGGCATTATCCGCTCCCTGGCTCTCTCTCTTCCCTCCTGAAGGGAATGTGGAAGATAAG
GATATGACTGGGACCCAGTTGCCCGAGAGCCTGGAGGACATGGCAATGTATATCTCTCAGGAGTGGGACC
ATCAGGATCCTAGTAAGAGAGCTCTATCAAGGTATATGGTACAAGATAGCTATGAGAACTCGGGGACTCT
AGAGTCCAGCATTCCCAGTCAGGAGGTCTCAAGCACCCACGTGGAGCAAGGAGAGAAGCTGTGGGATTCA
AGTGTCCAGACCTGCAAGGAAGGCATGAACCCCAGAAACCCAGTTCCAGGAGTGGAAAAGTTTGAGAACC
AAGAAAGAAATGTTGAGTCTGTTTCTCCTGAAAGTACCCATCCTCCAGTACTATTGCCTGGCCAGGCTAG
AAGGGAGGTGCCCTGGAGTCCTGAGCAGGGAAGACTTGATGACAGAGAAGGACATTGGGAATGTCCCCCA
GAGGACAAAATAGAGGAGTCTTTAGTGGGAACCCCAAGTTGTAAAGGACTGGTGCAAGCAAAAGAACAGC
CCAAGAAACTCCATTTGTGTGCCTTGTGTGGCAAGAACTTTTCTAATAACTCAAACCTAATTAGGCACCA
GAGAATACATGCAGCAGAAAAGCTGTGTATGGATGTAGAGTGTGGTGAAGTCTTTGGTGGACACCCACAT
TTTCTGTCACTGCACAGAACACACATAGGAGAGGAAGCTCATAAGTGCCTTGAATGTGGAAAATGCTTCA
GTCAAAATACCCACCTCACCCGCCATCAGCGCACCCACACAGGGGAAAAGCCCTTCCAGTGCAATGCCTG
TGGGAAAAGCTTCTCTTGCAACTCCAACCTCAACAGACACCAAAGGACACACACTGGGGAGAAGCCCTAC
AAGTGCCCAGAGTGTGGGGAGATCTTTGCTCACAGCTCCAACCTGCTTCGTCACCAGAGGATCCACACTG
GAGAGAGGCCCTATCGCTGTAGTGAATGTGGCAAAAGTTTCTCTCGGAGTTCACATCTTGTTATTCATGA
AAGAACTCATGAGAAAGAGAGACTCGACCCTTTCCCTGAGTGTGGTCAAGGCATGAATGACAGTGCCCCC
TTTCTTACAAACCACAGAGTGGAGAAGAAACTCTTTGAATGTTCCACTTGTGGGAAAAGTTTCCGGCAGG
GCATGCACCTTACCAGACATCAGAGAACACACACAGGAGAAAAACCGTATAAGTGTATCCTTTGTGGGGA
AAACTTCTCTCATAGATCTAACTTAATCAGGCACCAGAGGATTCATACAGGAGAAAAACCCTATACCTGT
CACGAGTGTGGAGACAGTTTCTCTCACAGTTCCAACCGGATTCGTCACCTGAGAACCCATACAGGAGAAA
GACCTTATAAATGTTCTGAATGTGGAGAAAGCTTCTCTCGGAGCTCACGTCTTACAAGTCATCAAAGGAC
TCACACTGGTTAG

Translation (680 aa):
MTMAAGPSSQEPEGLLIVKLEEDCAWSHEVPPPEPEPSPEASHLRFRRFRFQDAPGPREALSRLQELCRG
WLRPEMRTKEQILELLVLEQFLTILPQEIQSRVQELRPESGEEAVTLVERMQKELGKLRQQVTNQGRGAE
VLLEEPLPLETAGESPSFKLEPMETERSPGPRLQELLDPSPQRDSQAVKERALSAPWLSLFPPEGNVEDK
DMTGTQLPESLEDMAMYISQEWDHQDPSKRALSRYMVQDSYENSGTLESSIPSQEVSSTHVEQGEKLWDS
SVQTCKEGMNPRNPVPGVEKFENQERNVESVSPESTHPPVLLPGQARREVPWSPEQGRLDDREGHWECPP
EDKIEESLVGTPSCKGLVQAKEQPKKLHLCALCGKNFSNNSNLIRHQRIHAAEKLCMDVECGEVFGGHPH
FLSLHRTHIGEEAHKCLECGKCFSQNTHLTRHQRTHTGEKPFQCNACGKSFSCNSNLNRHQRTHTGEKPY
KCPECGEIFAHSSNLLRHQRIHTGERPYRCSECGKSFSRSSHLVIHERTHEKERLDPFPECGQGMNDSAP
FLTNHRVEKKLFECSTCGKSFRQGMHLTRHQRTHTGEKPYKCILCGENFSHRSNLIRHQRIHTGEKPYTC
HECGDSFSHSSNRIRHLRTHTGERPYKCSECGESFSRSSRLTSHQRTHTG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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