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Report for CCDS26571.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26571.1 Public Mus musculus 13 Rmi1 23 108 98 CCDS HistoryNCBI Gene:74386Re-query CCDS DB by CCDS ID:26571.1See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 26571.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000042450.9 ENSMUSP00000041035.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000042450.9Link to Ensembl Protein Viewer:ENSMUSP00000041035.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000042450Re-query CCDS DB by Protein ID:ENSMUSP00000041035
Original member Current member EBI ENSMUST00000224479.1 ENSMUSP00000153050.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000224479.1Link to Ensembl Protein Viewer:ENSMUSP00000153050.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000224479Re-query CCDS DB by Protein ID:ENSMUSP00000153050
Original member Current member EBI ENSMUST00000225815.1 ENSMUSP00000153621.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000225815.1Link to Ensembl Protein Viewer:ENSMUSP00000153621.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000225815Re-query CCDS DB by Protein ID:ENSMUSP00000153621
Original member Current member EBI ENSMUST00000225828.1 ENSMUSP00000153675.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000225828.1Link to Ensembl Protein Viewer:ENSMUSP00000153675.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000225828Re-query CCDS DB by Protein ID:ENSMUSP00000153675
Original member NCBI NM_001168248.1 NP_001161720.1 Updated not alive Link to Nucleotide Sequence:NM_001168248.1Link to Protein Sequence:NP_001161720.1Re-query CCDS DB by Nucleotide ID:NM_001168248Re-query CCDS DB by Protein ID:NP_001161720
Current member NCBI NM_001168248.2 NP_001161720.1 Accepted alive Link to Nucleotide Sequence:NM_001168248.2Link to Protein Sequence:NP_001161720.1Re-query CCDS DB by Nucleotide ID:NM_001168248Re-query CCDS DB by Protein ID:NP_001161720Link to BLAST:NP_001161720.1
Original member NCBI NM_028904.3 NP_083180.3 Updated not alive Link to Nucleotide Sequence:NM_028904.3Link to Protein Sequence:NP_083180.3Re-query CCDS DB by Nucleotide ID:NM_028904Re-query CCDS DB by Protein ID:NP_083180
Current member NCBI NM_028904.4 NP_083180.3 Accepted alive Link to Nucleotide Sequence:NM_028904.4Link to Protein Sequence:NP_083180.3Re-query CCDS DB by Nucleotide ID:NM_028904Re-query CCDS DB by Protein ID:NP_083180Link to BLAST:NP_083180.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001161720.1 616 Q9D4G9 616 100% 0 0
NP_083180.3 616 Q9D4G9 616 100% 0 0

Chromosomal Locations for CCDS 26571.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 58407939 58409789 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1851 nt):
ATGAGTGTAGCTAGTGCTGTATTAAGAGTTGAAACCTGGCTTTTGGCAACATGGCATGTTAAGGTACCTC
CAATGTGGCTGGAAGCTTGTGTTAACTGGATCCAAGAAGAAAATAATAATGCTACTTTGAGTCAGGCACA
AATAAATAAACAAGTGTTGGAGCAATGGCTTCTTACTGACCTGAGAGACTTGGAACATCCTCTCTTACCT
GATGACATTTTAGAACTGCCAAAGGGAGAACTGAATGGGTTTTATGCTCTACAGATCAATTCTTTGGTTG
ATGTGAGTCAGCCTGCTTATTCACAGATACAGAAGCTGAGAGGAAAGAATACAACCAATGATCTCGTCTC
AGCTGAAACGCAGAGTACTCCAAAACCATGGGAAGTGAGGCCTTCTCGGATGCTGATGCTACAGCTCACT
GATGGTGTCACACACATTCAGGGAATGGAGTATCAGTCTATCCCAGCTCTCCATAGTGGTCTTCCTCCAG
GTACAAAAATTTTAGTTCGTGGATGCATTTTGTTCCGTCTTGGTGTTCTCTTACTGAAACCAGAAAATGT
GAAGGTGCTAGGGGGTGAGGTAGATGGTCTTTCAGAAGAAAATGCCCAAGAAAAAGTACTTGCAAGATTA
ATTGGGGAACTTGATCCTACAGTTCCAGTCATTCCAAATAATTCCATTCACAACGTGCCCAAAGTTTCAG
GGGGCTTAGATGCTGTTTTGGGGCCCTCGGATGAAGAACTCTTGGCAAGTCTTGATGAAAGTGAAGAGTC
TGCAGCAAATAATGACGTGGCTATGGAAAGAAGCTGTTTCAGCACAGGCACTTCCTCAAATACTACTCCG
ACAAATCCGTCTGGTTTTGAGCCAGGATGTAACATTTCTTCAAGGCCAAAGGAGAAACCACCAAACCAGC
CCACGCATTTCACTGATGGAGAATTTGATGACTTTTCACTGGAAGAGGCCTTGCTTTTGGAAGAGACTGT
CCAGAAAGAACAGATGGAAACAAAAGCATCGCAGCCACTAACTTTGAAGGAAAACACTGGTAAATGTATG
GAGATTTTTTCACATAAACCTAGTAGTCTGAACCACACAGCTTTGATTCATAAACAAGGAAACAGCAATT
TTGATGAAAAAACATCTGAACAAATGATTCATGAAGACAAATTTTTTGATTGTGCATCTACTAGAAACCA
TCATAAGAGATTCTCAGCTCATGATTTTACAAATGACAGTAAGATTTCAGAAGTAGATGATGCAGCACAA
CAGACCCTCAGCAGTTCAAATGTACATTGCTTACGTAATAAAATATTAAACAGAAAGCTGGACCTATCAG
AAAAGAGTTCACAAATTTCTAAAGAAAATGGCCACCCTTTCCAGGCTTGTTCTTCAAGATCATTTGAGAA
TAATACTTATCTATCTATTGGCATGGACTTACATTCTCCACCCTTTATCTATTTGTCTGTTCTAATGGCC
AGAAAGCCAAAGGAAGTTACTACTGTGACAGTCAAAGCGTTTATTGTCACTTTAACTGGAAATCTCTCAA
GTTCTGGTGGCTTTTGGGGTGTAACTGCAAAAGTTTCTGATGGTACTGCATATCTAGATGTAGATTTTAT
AGACGAAATACTTACCAGTATGATAGGGTATTCAGTACCAGAAATGAAACAATTAAGAAAGGACCCTCTT
AAATATAAAACATTCCTAGAAGGGTTACAGAAATGTCAGCGAGATCTGATCGATTTGTGTTGCCTGATGA
CTATTTCATACGATCCTTCTTCATGTAAAGGGGTGGTGCTGGAATTGCAAGATGTTGGTATGGAACACGT
GGAGAACCTAAAGAAACGGTTGAATAAATAA

Translation (616 aa):
MSVASAVLRVETWLLATWHVKVPPMWLEACVNWIQEENNNATLSQAQINKQVLEQWLLTDLRDLEHPLLP
DDILELPKGELNGFYALQINSLVDVSQPAYSQIQKLRGKNTTNDLVSAETQSTPKPWEVRPSRMLMLQLT
DGVTHIQGMEYQSIPALHSGLPPGTKILVRGCILFRLGVLLLKPENVKVLGGEVDGLSEENAQEKVLARL
IGELDPTVPVIPNNSIHNVPKVSGGLDAVLGPSDEELLASLDESEESAANNDVAMERSCFSTGTSSNTTP
TNPSGFEPGCNISSRPKEKPPNQPTHFTDGEFDDFSLEEALLLEETVQKEQMETKASQPLTLKENTGKCM
EIFSHKPSSLNHTALIHKQGNSNFDEKTSEQMIHEDKFFDCASTRNHHKRFSAHDFTNDSKISEVDDAAQ
QTLSSSNVHCLRNKILNRKLDLSEKSSQISKENGHPFQACSSRSFENNTYLSIGMDLHSPPFIYLSVLMA
RKPKEVTTVTVKAFIVTLTGNLSSSGGFWGVTAKVSDGTAYLDVDFIDEILTSMIGYSVPEMKQLRKDPL
KYKTFLEGLQKCQRDLIDLCCLMTISYDPSSCKGVVLELQDVGMEHVENLKKRLNK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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