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Report for CCDS17843.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17843.1 Public Mus musculus 3 Sgms2 23 108 98 CCDS HistoryNCBI Gene:74442Re-query CCDS DB by CCDS ID:17843.1See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17843.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000090246.4 ENSMUSP00000087713.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000090246.4Link to Ensembl Protein Viewer:ENSMUSP00000087713.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000090246Re-query CCDS DB by Protein ID:ENSMUSP00000087713
Original member NCBI NM_028943.5 NP_083219.2 Updated not alive Link to Nucleotide Sequence:NM_028943.5Link to Protein Sequence:NP_083219.2Re-query CCDS DB by Nucleotide ID:NM_028943Re-query CCDS DB by Protein ID:NP_083219
Current member NCBI NM_028943.6 NP_083219.2 Accepted alive Link to Nucleotide Sequence:NM_028943.6Link to Protein Sequence:NP_083219.2Re-query CCDS DB by Nucleotide ID:NM_028943Re-query CCDS DB by Protein ID:NP_083219Link to BLAST:NP_083219.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_083219.2 365 Q9D4B1 365 100% 0 0

Chromosomal Locations for CCDS 17843.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 131323107 131323310 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 131324939 131325105 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 131330323 131330476 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 131336165 131336282 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 131341769 131342223 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1098 nt):
ATGGATATCATAGAGACAGCAAAACTTGAAGGTCACTTGGAAAGTCAAACCAACGACTCCACCAACACTT
ACACAAGCCCCACCGAAGCTGTAGAGGAAGAGGGCAAAAATGGCAAGGGCAAACCCAAGACCTTATCCAA
CGGGTTACGAAAGGGTGCCAAAAAATACCCGGACTACATCCAGATTTCCATGCCCAACGACTCCAAGAAC
AAGTTTCCCCTGGAGTGGTGGAAAACAGGCATCGCCTTTGTGTATGCGCTCTTCAACCTCATCCTGACAA
CCGTCATGATCACCGTCGTGCACGAGAGGGTCCCTCCCAAGGAGCTCAGCCCTCCGCTCCCAGACAAGTT
TTTTGATTACTTCGACCGGGTCAAATGGGCATTTTCTGTATCAGAAATAAACGGGATGGTATTGGTTGGG
TTATGGATCACCCAGTGGCTCTTTCTGCGTTACAAGTCAATAGTGGGGCGCAGATTCTTCTTCATCATGG
GAACTTTATACCTGTATCGCTGTATAACTATGTATGTCACTACGTTACCTGTGCCCGGAATGCACTTCCA
GTGTGCTCCCAAGCTCAATGGAGACTCTCAGGCAAAAATACAGCGGATTCTCCGGCTGATTTCTGGCGGG
GGACTGTCTATCACGGGATCTCACATCCTGTGCGGAGACTTCCTCTTCAGCGGCCACACTGTCGTGCTCA
CACTTACTTACTTGTTCATCAAAGAATATTCACCTCGTCACTTCTGGTGGTATCACTTGGTCTGCTGGCT
GCTGAGTGCGGCTGGGATCATCTGCATTCTCGTAGCGCATGAACACTATACCGTGGACGTCATCATTGCT
TACTATATCACAACACGGCTGTTTTGGTGGTACCATTCCATGGCCAACGAAAAGAACTTGAAGGTCTCTT
CCCAGACGAACTTCTTGTCTCGGGCTTGGTGGTTCCCCATCTTCTACTTTTTTGAGAAGAATGTGCAAGG
CTCAATTCCTTGCTGCTTTTCCTGGCCGCTGTCCTGGCCCCCTGGCTGCTTCAAGTCATCGTGCAGAAAG
TATTCCCGGGTCCAGAAGATCGGGGAGGATAATGAGAAGTCTACCTGA

Translation (365 aa):
MDIIETAKLEGHLESQTNDSTNTYTSPTEAVEEEGKNGKGKPKTLSNGLRKGAKKYPDYIQISMPNDSKN
KFPLEWWKTGIAFVYALFNLILTTVMITVVHERVPPKELSPPLPDKFFDYFDRVKWAFSVSEINGMVLVG
LWITQWLFLRYKSIVGRRFFFIMGTLYLYRCITMYVTTLPVPGMHFQCAPKLNGDSQAKIQRILRLISGG
GLSITGSHILCGDFLFSGHTVVLTLTYLFIKEYSPRHFWWYHLVCWLLSAAGIICILVAHEHYTVDVIIA
YYITTRLFWWYHSMANEKNLKVSSQTNFLSRAWWFPIFYFFEKNVQGSIPCCFSWPLSWPPGCFKSSCRK
YSRVQKIGEDNEKST


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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