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Report for CCDS23533.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23533.1 Public Mus musculus 9 P4htm 23 108 98 CCDS HistoryNCBI Gene:74443Re-query CCDS DB by CCDS ID:23533.1See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 23533.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000006853.10 ENSMUSP00000006853.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000006853.10Link to Ensembl Protein Viewer:ENSMUSP00000006853.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000006853Re-query CCDS DB by Protein ID:ENSMUSP00000006853
Original member Current member NCBI NM_028944.4 NP_083220.3 Accepted alive Link to Nucleotide Sequence:NM_028944.4Link to Protein Sequence:NP_083220.3Re-query CCDS DB by Nucleotide ID:NM_028944Re-query CCDS DB by Protein ID:NP_083220Link to BLAST:NP_083220.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_083220.3 503 Q8BG58-1 503 100% 0 0

Chromosomal Locations for CCDS 23533.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 108579088 108579308 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 108579716 108579839 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 108580016 108580106 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 108580719 108580904 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 108581842 108582004 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 108582847 108582943 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 108583642 108583832 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 108596899 108596980 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 108597208 108597564 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1512 nt):
ATGGCGGCAGCGGTGGCGACCGTGCAGCGGCCTGAGGCTGAGACAGTCGAGGAGGCCTCAAATCTTCAGT
GGCCGCTACCACCGGAGCATCGCCCTTCCGGGGCAGCGACCAGACCAGGCGATAGTGAAGACGCCCCGGT
GCGGCCACTGTGCAAGCCGCGGGGCATCTGTTCCCGTGCCTACTTCTTGGTGCTGATGGTGTTCGTGCAC
CTGTACTTGGGCAACGTGCTGGCCCTGCTGCTCTTCGTGCACTACAGCAACGGAGACGAGAGCACAGACC
CCGGACCCCAGCGCCGCGAGCAGAGCCCCCAGCCAGTGCCAACCTTGGGTCCCCTCACCCGGCTGGAGGG
CATCAAGGTGGGATATGAGCGGAAAGTCCAGGTGGTCGCGGGCAGGGATCACTTCATCCGAACCCTCAGC
CTCAAGCCGCTGCTTTTTGAAATCCCAGGCTTCCTGAGTGACGAGGAGTGTCGGCTCATCATCCACCTGG
CACAGATGAAAGGGTTACAGCGAAGCCAGATCCTGCCCACTGAGGAGTATGAGGAGGCGATGAGCGCCAT
GCAGGTCAGCCAGCTGGACCTCTTCCAGCTGTTGGATCAGAACCACGACGGTCGCCTGCAGCTCCGAGAG
GTCCTGGCCCAGACTCGCCTGGGAAATGGACGGTGGATGACTCCAGAGAACATTCAGGAGATGTACTCTG
CAATCAAAGCAGACCCTGACGGTGATGGCGTGCTGAGTCTGCAGGAATTTTCCAACATGGACCTCCGAGA
CTTCCACAAGTACATGAGGAGCCATAAGGCAGAATCCAATGAGCTGGTGAGGAACAGCCACCACACATGG
CTCCACCAGGGAGAGGGAGCACATCACGTCATGCGTGCCATCCGCCAGAGGGTCCTGCGCCTCACTCGCC
TCTCCCCGGAGATTGTGGAGTTCAGTGAGCCACTACAGGTTGTACGATATGGTGAGGGAGGTCACTACCA
TGCCCATGTGGACAGCGGACCCGTGTACCCAGAGACCATCTGCTCCCATACCAAGCTGGTAGCCAATGAA
TCTGTACCGTTTGAGACCTCCTGTCGCTACATGACAGTGCTGTTTTATTTGAACAATGTCACCGGTGGGG
GTGAGACCGTCTTCCCTGTGGCAGACAACAGGACCTATGATGAAATGAGTCTGATTCAGGATGATGTCGA
TCTCCGGGACACTCGAAGGCACTGTGACAAGGGCAACCTTCGTGTCAAGCCCCAGCAAGGAACTGCAGTC
TTTTGGTACAACTACCTTCCTGATGGGCAAGGCTGGGTGGGTGAAGTGGACGACTACTCGTTGCATGGGG
GCTGCCTGGTCACCCGCGGCACCAAGTGGATCGCTAACAACTGGATCAATGTGGACCCTAGCCGGGCACG
GCAAGCCTTGTTCCAGCAGGAGATGGCTCGTCTGGCTCGGGAAGGTGGCATGGACTCACAACCCGAGTGG
GCCTTGGACCGAGCCTACAGTGATGCCCGTGTGGAGCTCTGA

Translation (503 aa):
MAAAVATVQRPEAETVEEASNLQWPLPPEHRPSGAATRPGDSEDAPVRPLCKPRGICSRAYFLVLMVFVH
LYLGNVLALLLFVHYSNGDESTDPGPQRREQSPQPVPTLGPLTRLEGIKVGYERKVQVVAGRDHFIRTLS
LKPLLFEIPGFLSDEECRLIIHLAQMKGLQRSQILPTEEYEEAMSAMQVSQLDLFQLLDQNHDGRLQLRE
VLAQTRLGNGRWMTPENIQEMYSAIKADPDGDGVLSLQEFSNMDLRDFHKYMRSHKAESNELVRNSHHTW
LHQGEGAHHVMRAIRQRVLRLTRLSPEIVEFSEPLQVVRYGEGGHYHAHVDSGPVYPETICSHTKLVANE
SVPFETSCRYMTVLFYLNNVTGGGETVFPVADNRTYDEMSLIQDDVDLRDTRRHCDKGNLRVKPQQGTAV
FWYNYLPDGQGWVGEVDDYSLHGGCLVTRGTKWIANNWINVDPSRARQALFQQEMARLAREGGMDSQPEW
ALDRAYSDARVEL


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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