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Report for CCDS48938.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
48938.1 Public Mus musculus 11 Cfap97d1 23 108 98 CCDS HistoryNCBI Gene:75437Re-query CCDS DB by CCDS ID:48938.1See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 48938.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000010985.7 ENSMUSP00000010985.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000010985.7Link to Ensembl Protein Viewer:ENSMUSP00000010985.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000010985Re-query CCDS DB by Protein ID:ENSMUSP00000010985
Original member Current member NCBI NM_029287.1 NP_083563.1 Accepted alive Link to Nucleotide Sequence:NM_029287.1Link to Protein Sequence:NP_083563.1Re-query CCDS DB by Nucleotide ID:NM_029287Re-query CCDS DB by Protein ID:NP_083563Link to BLAST:NP_083563.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_083563.1 164 Q9DAN9 164 100% 0 0

Chromosomal Locations for CCDS 48938.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 101987114 101987237 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 101987947 101988017 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 101988446 101988564 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 101990794 101990917 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 101991456 101991512 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (495 nt):
ATGAACAATTCCTTGGATTATTTGGCCTACCCTGTAATCGTTTCTAATCACAGGCAAAGCACAACCTTTA
GGAAGAAACTGGACTTTGGCCACTACATATTGCACAAAAATAGAGTACAAATAGTGAAGCCTGCCGTCGA
TACCAAACCTCCAATGGCACACACACATTACATTTTAAAATTGAGCAAAATCCAGGGTGAACAAAAGAGA
ATCGACAAAATTGAATATGAAAATAGACAATTGTGTCAGAAAATTGCGAATGCCTATCGAGGCCCTGCCA
AGGTGGACTGCTGGAATGAGTATCTTTCAAAAAGCTTAAACAGAGAATCAAGGAACCGAGAGCTAGTAAG
AATCACCATGGAAAACCAGGGCATCCTAAGGAGGTTGAGTGATCGCAAACCCAACTATGACCGCAGGTCA
TCGGAGATGGACTGGCAGAATTCAAGGCGGTATATCAGAAACACAACAAGATATCTTCTCTTCCAAGAAG
ACTAG

Translation (164 aa):
MNNSLDYLAYPVIVSNHRQSTTFRKKLDFGHYILHKNRVQIVKPAVDTKPPMAHTHYILKLSKIQGEQKR
IDKIEYENRQLCQKIANAYRGPAKVDCWNEYLSKSLNRESRNRELVRITMENQGILRRLSDRKPNYDRRS
SEMDWQNSRRYIRNTTRYLLFQED


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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