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Report for CCDS36154.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
36154.2 Reviewed, update pending Mus musculus 11 Lyrm7 23 108 98 CCDS HistoryNCBI Gene:75530Re-query CCDS DB by CCDS ID:36154.2See the combined annotation on chromosome 11 in Sequence Viewer

Public Note for CCDS 36154.1
The coding region has been updated to start at an alternate in-frame start codon that is supported by conservation data.

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 36154.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000148070.7 ENSMUSP00000118373.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000148070.7Link to Ensembl Protein Viewer:ENSMUSP00000118373.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000148070Re-query CCDS DB by Protein ID:ENSMUSP00000118373
Original member Current member EBI ENSMUST00000144164.8 ENSMUSP00000120778.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000144164.8Link to Ensembl Protein Viewer:ENSMUSP00000120778.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000144164Re-query CCDS DB by Protein ID:ENSMUSP00000120778
Original member Current member NCBI NM_029327.5 NP_083603.4 Pending alive Link to Nucleotide Sequence:NM_029327.5Link to Protein Sequence:NP_083603.4Re-query CCDS DB by Nucleotide ID:NM_029327Re-query CCDS DB by Protein ID:NP_083603Link to BLAST:NP_083603.4

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_083603.4 104 Q9DA03 104 100% 0 0

Chromosomal Locations for CCDS 36154.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 54841132 54841202 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 54848579 54848660 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 54850345 54850415 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 54853227 54853299 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 54860552 54860569 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (315 nt):
ATGGGTCAGCCCGCCAAGGTTTTACAGCTCTTTAAAACACTGCACAGGACCAGACAGCAAGTTTTTAAAA
ATGATAAGAGAGCATTGGAAGCAGCCAGAGTAAAGATAAATGAAGAATTCAAAAAACATAAAAACGAGAC
ATCTCCAGAGAAAATAAAAGAGATGATGAAACTAGGTTCTGATGTGGAATTATTGCTCAGAACAGCTGTT
ATTCAAGGAATTCACACAGACCATGACACACTGCAACTGGTCCCCAGGAAAGATCTTCTCACAGAAAATG
TGCCGTACTGTGATGCGCCAACCCAGAAGCAGTAA

Translation (104 aa):
MGQPAKVLQLFKTLHRTRQQVFKNDKRALEAARVKINEEFKKHKNETSPEKIKEMMKLGSDVELLLRTAV
IQGIHTDHDTLQLVPRKDLLTENVPYCDAPTQKQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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