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Report for CCDS89122.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
89122.1 Public Mus musculus 17 Hdgfl2 23 108 98 CCDS HistoryNCBI Gene:15193Re-query CCDS DB by CCDS ID:89122.1Re-query CCDS DB by GeneID:15193See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 89122.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000225843.1 ENSMUSP00000153249.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000225843.1Link to Ensembl Protein Viewer:ENSMUSP00000153249.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000225843Re-query CCDS DB by Protein ID:ENSMUSP00000153249
Original member NCBI NM_001304784.2 NP_001291713.1 Updated not alive Link to Nucleotide Sequence:NM_001304784.2Link to Protein Sequence:NP_001291713.1Re-query CCDS DB by Nucleotide ID:NM_001304784Re-query CCDS DB by Protein ID:NP_001291713
Current member NCBI NM_001304784.3 NP_001291713.1 Accepted alive Link to Nucleotide Sequence:NM_001304784.3Link to Protein Sequence:NP_001291713.1Re-query CCDS DB by Nucleotide ID:NM_001304784Re-query CCDS DB by Protein ID:NP_001291713Link to BLAST:NP_001291713.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001291713.1 678 Q3UMU9-3 678 100% 0 0

Chromosomal Locations for CCDS 89122.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 56079755 56079826 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 56082100 56082176 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 56082277 56082415 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 56093522 56093722 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 56096017 56096130 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 56096205 56096276 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 56096821 56097016 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 56097088 56097163 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 56097235 56097526 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 56097882 56097985 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 56098484 56098557 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 56098683 56098753 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 56098974 56099075 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 56099177 56099387 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 56099859 56099985 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 56100345 56100453 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2037 nt):
ATGCCGCACGCCTTCAAGCCCGGGGACTTGGTGTTTGCCAAGATGAAGGGCTACCCGCACTGGCCGGCCC
GGATTGATGACATTGCTGATGGTGCCGTGAAGCCCCCACCCAACAAATACCCCATCTTCTTCTTTGGAAC
GCATGAAACGGCCTTCCTGGGACCCAAGGACCTGTTCCCCTATGATAAGTGCAAGGACAAGTACGGAAAG
CCCAACAAGAGGAAAGGCTTCAATGAGGGGCTCTGGGAGATCCAGAACAACCCCCATGCCAGCTACAGTG
CGCCTCCGCCGGTGAGCTCCTCTGACAGTGAGGCCCCTGAAGCCGACCTGGGTTGTGGCAGCGACGTGGA
CAAGGACAAAGAATCCCGGAGGGTCATGACTGTGACAGCTGTGACCACCACAGCCACCAGTGACAGGATG
GAGAGCGATTCTGACTCTGACAAGAGCAGTGATCACAGTGGCCTGAAGCGGAAGACACCAGTCTTGAAGG
TGTCAGTCTCTAAACGAGCTAGAAGAGCTTCCAGTGACCTGGATCAGGCCAGTGTGTCCCCATCAGAAGA
GGACTCTGAGAGCCCATCTGAGTCGGAGAAGACCAGTGACCAGGATTTTACCCCAGAGAAGAAGACAGCG
GCCCGGCCGCCACGGCGAGGTCCTCTGGGAGGACGCAAGAAGAAGCACCCCACTGGCTATGCCTGTCCCC
AGAAGGTGCCATCAGCCTCGGATTCAGACTCCAAAGCCGACTCAGATGGGGCCAAGGAGGAGCCTGTGGT
TACAGCACAGCCGTCTCCATCCTCCTCGTCGTCGTCCTCATCATCATCCTCCTCAGACTCAGATGTGTCT
GTCAAGAAACCCCCTCGAGGTAGAAAGCCAGCTGAGAAGCCACCCCCAAAACCCCGAGGGCGGAGACCAA
AGCCAGAACGACCACCTTCCACCTCCAGCAGTGACAGTGACAGTGACAGTGGTGAAGTAGACCGCATCAG
TGAATGGAAGAGACGTGATGAAGAGCGAAGGCGTGAGCTGGAGGCTCGGAGGCGACGGGAGCAGGAGGAA
GAGCTCCGGAGACTTCGAGAACAGGAGAGGGAGGAGAAGGAGCGGCGCAAGGAGCGGGCAGAGCGTGGGG
GCAGCAGTGGAGAGGAGCTGGAGGACGAGGAGCCTGTGAAGAAGCGTAGCCGAAAGGCTCGAGGCCGAGG
CACACCATCCTCCTCTGACTCAGAACCTGAGGGGGAGCTTGGGAAAGAGGGGAAGAAGTTGGCCAAGAAG
TCCCAACTGCCAGGCTCAGAGTCTGCAAGGAAGCCTGGGCAAAAGGAGAAGAGAGGGCGGCCAGATGAGA
AGCCACGAGCCAGGCCTGTGAAGGTGGAGCGGACGCGGAAGCGGTCAGAGGGTCTCTCACTGGAAAGGAA
GGGGGAGAAGAAGAAAGAACCCTCCGTAGAGGAGAGACTGCAAAAGCTGCACAGCGAGATCAAATTTGCA
CTGAAGGTTGACAACCCAGATGTGAGGAAGTGTCTGAGTGCACTGGAAGAACTGGGGACTCTGCAGGTAA
CCTCTCAGATTCTTCAGAAGAACACAGATGTGGTAGCAACGCTGAAGAAGATTCGCCGGTACAAGGCCAA
CAAGGATGTGATGGCGAAGGCAGCAGAGGTCTACACCCGGCTCAAGTCACGGGTCCTGGGGCCGAAAGTT
GAGGCTCTCCAGAAGGTGAACAAGGCTGGAGCCGAGAAGGAACGGGCCGATAACGAGAAGCTAGAGGAGC
AGCCGGGGGAGCAGGCTCCCAGAGAGCTGGCAGAGGATGAGCCCAGCACCGATCGGTCAGCACCTGTGAA
TGGTGAGGCCACATCCCAGAAGGGGGAGAACATGGAAGACAGAGCACAGGAAGACGGGCAGGACTCTGAA
GATGGCCCCAGGGGTGGCTCCTCAGAAGAGCTGCATGACAGCCCACGCGACAACTCGGACCCAGCCAAGC
CTGGAAATGAGCGTCAGGACCATGAGAGGACACGGCTGGCCTCTGAGTCTGCCAATGATGACAATGAGGA
CAGCTGA

Translation (678 aa):
MPHAFKPGDLVFAKMKGYPHWPARIDDIADGAVKPPPNKYPIFFFGTHETAFLGPKDLFPYDKCKDKYGK
PNKRKGFNEGLWEIQNNPHASYSAPPPVSSSDSEAPEADLGCGSDVDKDKESRRVMTVTAVTTTATSDRM
ESDSDSDKSSDHSGLKRKTPVLKVSVSKRARRASSDLDQASVSPSEEDSESPSESEKTSDQDFTPEKKTA
ARPPRRGPLGGRKKKHPTGYACPQKVPSASDSDSKADSDGAKEEPVVTAQPSPSSSSSSSSSSSSDSDVS
VKKPPRGRKPAEKPPPKPRGRRPKPERPPSTSSSDSDSDSGEVDRISEWKRRDEERRRELEARRRREQEE
ELRRLREQEREEKERRKERAERGGSSGEELEDEEPVKKRSRKARGRGTPSSSDSEPEGELGKEGKKLAKK
SQLPGSESARKPGQKEKRGRPDEKPRARPVKVERTRKRSEGLSLERKGEKKKEPSVEERLQKLHSEIKFA
LKVDNPDVRKCLSALEELGTLQVTSQILQKNTDVVATLKKIRRYKANKDVMAKAAEVYTRLKSRVLGPKV
EALQKVNKAGAEKERADNEKLEEQPGEQAPRELAEDEPSTDRSAPVNGEATSQKGENMEDRAQEDGQDSE
DGPRGGSSEELHDSPRDNSDPAKPGNERQDHERTRLASESANDDNEDS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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