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Report for CCDS36345.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
36345.1 Public Mus musculus 11 Higd1b 23 108 98 CCDS HistoryNCBI Gene:75689Re-query CCDS DB by CCDS ID:36345.1See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 36345.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000021302.14 ENSMUSP00000021302.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000021302.14Link to Ensembl Protein Viewer:ENSMUSP00000021302.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000021302Re-query CCDS DB by Protein ID:ENSMUSP00000021302
Original member Current member EBI ENSMUST00000107072.1 ENSMUSP00000102687.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000107072.1Link to Ensembl Protein Viewer:ENSMUSP00000102687.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000107072Re-query CCDS DB by Protein ID:ENSMUSP00000102687
Original member Current member EBI ENSMUST00000107073.7 ENSMUSP00000102688.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000107073.7Link to Ensembl Protein Viewer:ENSMUSP00000102688.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000107073Re-query CCDS DB by Protein ID:ENSMUSP00000102688
Original member Current member NCBI NM_001357580.2 NP_001344509.1 Accepted alive Link to Nucleotide Sequence:NM_001357580.2Link to Protein Sequence:NP_001344509.1Re-query CCDS DB by Nucleotide ID:NM_001357580Re-query CCDS DB by Protein ID:NP_001344509Link to BLAST:NP_001344509.1
Original member Current member NCBI NM_080846.2 NP_543122.1 Accepted alive Link to Nucleotide Sequence:NM_080846.2Link to Protein Sequence:NP_543122.1Re-query CCDS DB by Nucleotide ID:NM_080846Re-query CCDS DB by Protein ID:NP_543122Link to BLAST:NP_543122.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001344509.1 98 Q99JY6 98 100% 0 0
NP_543122.1 98 Q99JY6 98 100% 0 0

Chromosomal Locations for CCDS 36345.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 102836663 102836762 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 102837234 102837368 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 102837908 102837969 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (297 nt):
ATGTCTGCTAACAAGGGCTGGTGGGTGCCACCTGAGGGTGAGGACAACCTGTCCAAGAAGTTCCTAAGGA
AGACCAGGGAGTCTCCACTGGTGCCTATAGGTGTAGCAGGCTGCCTGGTGATAGCAGCATACAGGATTTA
CCGGCTGAAGGCTCGGGGTTCTACCAAGCTCTCCATCCATCTGATTCACACCAGAGTGGCGGCACAGGCG
TGTGCTGTGGGGGCCATCATGCTTGGTGCCATGTATACAATGTACAGAGATTACATCAAGAGGGTGTCAG
AGGATGCCGAGAAGTAG

Translation (98 aa):
MSANKGWWVPPEGEDNLSKKFLRKTRESPLVPIGVAGCLVIAAYRIYRLKARGSTKLSIHLIHTRVAAQA
CAVGAIMLGAMYTMYRDYIKRVSEDAEK


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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