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Report for CCDS36096.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
36096.1 Public Mus musculus 11 Hormad2 23 108 98 CCDS HistoryNCBI Gene:75828Re-query CCDS DB by CCDS ID:36096.1See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 36096.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000109948.7 ENSMUSP00000105574.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000109948.7Link to Ensembl Protein Viewer:ENSMUSP00000105574.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000109948Re-query CCDS DB by Protein ID:ENSMUSP00000105574
Original member Current member EBI ENSMUST00000109949.7 ENSMUSP00000105575.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000109949.7Link to Ensembl Protein Viewer:ENSMUSP00000105575.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000109949Re-query CCDS DB by Protein ID:ENSMUSP00000105575
Original member NCBI NM_029458.1 NP_083734.1 Updated not alive Link to Nucleotide Sequence:NM_029458.1Link to Protein Sequence:NP_083734.1Re-query CCDS DB by Nucleotide ID:NM_029458Re-query CCDS DB by Protein ID:NP_083734
Current member NCBI NM_029458.2 NP_083734.1 Accepted alive Link to Nucleotide Sequence:NM_029458.2Link to Protein Sequence:NP_083734.1Re-query CCDS DB by Nucleotide ID:NM_029458Re-query CCDS DB by Protein ID:NP_083734Link to BLAST:NP_083734.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_083734.1 306 Q5SQP1-1 306 100% 0 0

Chromosomal Locations for CCDS 36096.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 4346562 4346666 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 4408590 4408843 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 4409007 4409158 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 4412213 4412280 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 4420704 4420730 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 4421589 4421609 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 4424271 4424307 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 4424756 4424819 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 4427244 4427385 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 4435002 4435052 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (921 nt):
ATGGCTACTGCGCAGCTCTCTCACAACACCAGAACACTGAAGGCGTCTAAGAACACGATTTTCCCGTCCC
AAGTGACAAATGAGCATGAGTCACTGGTGGTGGTGAAGAAGCTTTTTGCTACTTGTATCTCATGTATAAC
GTACCTGAGGGGCTTGTTTCCAGAGAGCTCCTACAGAGACCGCCGTTTGGATGACCTCAGTTTAAAAATT
CTCCGGGAAGACAAAAAGTGTCCGGGGTCATTACATATTATTAAATGGATTCAAGGTTGTTTTGATGCTT
TGGAAAAGAGATACCTACACATGGCAGTATTAACACTTTACACAAATCCCAAGGAACCTGAGAAAGTGAC
TGAGATATACCAATTCAGATTCAAATACACAAAAAAAGGAACCACTATGGACTTTGACAGCAGCAGCACA
AGCTTTGAAAGTGGGACAGACAGTGAAGATATTAAGAAAGCCTGTTCCCTACTAATCCGTCAATTGTATA
TACTGATGCAGAATCTTGGACCCCTTCCGAATGATGTTATACTTACTATGAAACTCCATTATTATAACTC
AGTGACCCCACATGATTACCAACCCCCTGGCTTTAAAGAAGCGGTGAATTCACACTTCCTGCTGTTTGAG
GGGGAGCCTGTGAGCCTTCGAATGGGTTCAGTCTCCTCTGGCTTTCACAGCATGAAAGTAAAAGTCACAA
CGGAGGCCACCAGAATGCTCGATGGGGAGAACAGTGTCAGTCAGGACGATGGCACTACTGAGATAGCTCA
TCAGGGGCTAGACTGTGACGAGGAAGAGGAGGCCTGCGGCAGTCAAGTCCAAAGAATGAATTTTGTGCAC
ATTGAGCCAAGTTTTGAAAGTTCCAGAAAGAAGAAGAAGGTCAGCGAACCAGTGACAGTCTTCATTCCTA
ACAGAAAATGA

Translation (306 aa):
MATAQLSHNTRTLKASKNTIFPSQVTNEHESLVVVKKLFATCISCITYLRGLFPESSYRDRRLDDLSLKI
LREDKKCPGSLHIIKWIQGCFDALEKRYLHMAVLTLYTNPKEPEKVTEIYQFRFKYTKKGTTMDFDSSST
SFESGTDSEDIKKACSLLIRQLYILMQNLGPLPNDVILTMKLHYYNSVTPHDYQPPGFKEAVNSHFLLFE
GEPVSLRMGSVSSGFHSMKVKVTTEATRMLDGENSVSQDDGTTEIAHQGLDCDEEEEACGSQVQRMNFVH
IEPSFESSRKKKKVSEPVTVFIPNRK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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