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Report for CCDS25218.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25218.1 Public Mus musculus 11 Lpo 23 108 98 CCDS HistoryNCBI Gene:76113Re-query CCDS DB by CCDS ID:25218.1See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25218.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000103177.9 ENSMUSP00000099466.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000103177.9Link to Ensembl Protein Viewer:ENSMUSP00000099466.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000103177Re-query CCDS DB by Protein ID:ENSMUSP00000099466
Original member NCBI NM_080420.2 NP_536345.2 Updated not alive Link to Nucleotide Sequence:NM_080420.2Link to Protein Sequence:NP_536345.2Re-query CCDS DB by Nucleotide ID:NM_080420Re-query CCDS DB by Protein ID:NP_536345
Current member NCBI NM_080420.3 NP_536345.2 Accepted alive Link to Nucleotide Sequence:NM_080420.3Link to Protein Sequence:NP_536345.2Re-query CCDS DB by Nucleotide ID:NM_080420Re-query CCDS DB by Protein ID:NP_536345Link to BLAST:NP_536345.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_536345.2 710 Q5SW46 710 100% 0 0

Chromosomal Locations for CCDS 25218.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 87806847 87807054 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 87807243 87807480 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 87809127 87809300 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 87810116 87810368 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 87814247 87814407 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 87814897 87815221 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 87816412 87816618 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 87817298 87817427 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 87817734 87817851 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 87818395 87818549 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 87821066 87821153 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 87822199 87822274 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2133 nt):
ATGAAAGTGCTTCTGCATCTCCCAGCCCTCCTGGCTTCCCTGACCTTGCTCCAGACTGCGGCATCTGCCA
GCGATGATCCAACTGCCGAGACTGACATCATCCACGACACAGTGGAAGAGGTCAAGGTCTGGGTCAACAA
GGCCTTCCTGGATTCCCGGGACAGGCTGAAGATGGCCATGACAACCAAGATACATAGCACCCGTCATCTG
TCAGATTATCTCAAGCATGCCAAAGGCCGGACACGCACAGCCATCCGGAGTGGGCAGGTGTGGGAAGAGT
CCCTAAAGAAACTGTCTCAGTTTCTCACCAATGTCACAGGTCAAGGCCTGGACTTGACTTTGCTCTCTTG
GGAGGCGGGCTGTGATCCCCCTGCTCCAACAATGACTTGCAACATAAGTAGCCCTTACCGGACCATCACT
GGATACTGTAACAACAGGAAGAATCCAGCGCTGGGATCCGCCAACAGGGCGCTGGCTCGATGGCTGCCCG
CAGAATACGAGGACGGGCTCTCCCTCCCTTACGGGTGGACGCCGGGGAAGATGCGGAACGGCTTCCCTCT
CCCGCAGCCCCGTGAAGTCTCTAACCAGATTGCAGCCTATCTGAATGAGGAGGACGTTCTGGACCAGAAG
AGATCCATGCTCTTCATGCAGTGGGGTCAAATCGTGGACCACGACATGGACTTTGCCCCTGAAACTGAAA
TGGGGAGTGATACCTACACCAAAGCCCAGTGTGACGAACACTGTATCCAGGGAGACAACTGCTTCCCCAT
CATGTTCCCACCTGGTGACCCTAAATTAAAGACTCAGGGGAAGTGCATGCCTTTCTTCAGAGCTGGATTT
GTCTGCCCCACACCACCCTATAAATCCCTGGCCCGAGAGCAGATCAATGCTCTAACCTCTTTCCTGGATG
CTAGCCTAGTGTATAGCCCTGAGCCAAGCCTGGCAAATCGACTTAGAAACCTCAGCAGCCCCTTGGGCCT
CATGGCTGTCAATGAAGAAGTCTCAGACAATGGGCGGCCCTTCCCGCCTTTCGTCAAAATGAAACCCAGC
CCCTGCGAGGTCATCAATGCCACAGCTGGTGTGCCCTGCTTCTTGGCAGGGGACTCCCGAGCCTCAGAGC
AGATCTTGTTGGCCACATCCCACACACTCTTTATCCGGGAGCACAACCGGTTGGCCACAGAACTAAGCAG
ACTCAACCCGCATTGGGACAGAGAGACGCTCTATCAGGAAGCAAGGAAAATCATGGGAGCCTTCATACAG
ATTACCACCTTTAGGGACTACCTACCCATCCTACTGGGTGATGAGATGCAGAAGTGGATTCCCCCATACC
AAGGCTACAATGAGTCTGTAGACCCCCGAATTTCCAATGTCTTCACCTTTGCTTTACGCTTCGGCCACTT
GGAGATCCCCTCTACTGTGTACCGCCTAGATGAGAATTATCAGCCGTGGGGTTCAGAATCTGAGCTACCC
CTGCACACTGTCTTTTTCAACACCTGGAGGCTGGTCAAGGATGGTGGAATTGATCCTCTGGTTCGAGGTC
TGTTGGCCAAGAATGCCAAGTTGATGCATCAGAACAAAATGATGACAGGCGAGCTTCGAAACAAGCTGTT
CCAACCGAATCACACCATCCACGGCTTCGACCTGGCTTCCATCAACATACAGCGGAGCAGAGACCACGGG
CAGCCTGGGTACAATTCCTGGAGAGCTTTCTGTGGCCTGTCCCAACCAAAAACACTAGAGGAGCTGAGTG
CTGTCATGAAAAACGAGGTGCTGGCCAAGAAGCTGATGGACCTCTATGGAACCCCGAGCAACATTGATAT
CTGGCTAGGGGCCGTCGCTGAACCCCTGGTCCACAGGGGTCGGGTGGGACCTCTCTTGACCTGTCTCCTG
GGCCAGCAGTTCCAGCGGATCCGAGATGGAGACAGGTTCTGGTGGGAGAACCCCGGGGTCTTCACAGAGA
AGCAACGGGAGTCTCTACAGAAGATGTCCTTCTCCCGCCTGGTCTGTGACAACACTGGCATCGACAAGGT
CCCACTGAACCCGTTCCAGGCTAATGCCTACCCCCATGGCTTTGTGGACTGCTCTTCAATTGATAAGCTG
GACCTCTCACCCTGGGCCTCAGTGAAGGAGTAG

Translation (710 aa):
MKVLLHLPALLASLTLLQTAASASDDPTAETDIIHDTVEEVKVWVNKAFLDSRDRLKMAMTTKIHSTRHL
SDYLKHAKGRTRTAIRSGQVWEESLKKLSQFLTNVTGQGLDLTLLSWEAGCDPPAPTMTCNISSPYRTIT
GYCNNRKNPALGSANRALARWLPAEYEDGLSLPYGWTPGKMRNGFPLPQPREVSNQIAAYLNEEDVLDQK
RSMLFMQWGQIVDHDMDFAPETEMGSDTYTKAQCDEHCIQGDNCFPIMFPPGDPKLKTQGKCMPFFRAGF
VCPTPPYKSLAREQINALTSFLDASLVYSPEPSLANRLRNLSSPLGLMAVNEEVSDNGRPFPPFVKMKPS
PCEVINATAGVPCFLAGDSRASEQILLATSHTLFIREHNRLATELSRLNPHWDRETLYQEARKIMGAFIQ
ITTFRDYLPILLGDEMQKWIPPYQGYNESVDPRISNVFTFALRFGHLEIPSTVYRLDENYQPWGSESELP
LHTVFFNTWRLVKDGGIDPLVRGLLAKNAKLMHQNKMMTGELRNKLFQPNHTIHGFDLASINIQRSRDHG
QPGYNSWRAFCGLSQPKTLEELSAVMKNEVLAKKLMDLYGTPSNIDIWLGAVAEPLVHRGRVGPLLTCLL
GQQFQRIRDGDRFWWENPGVFTEKQRESLQKMSFSRLVCDNTGIDKVPLNPFQANAYPHGFVDCSSIDKL
DLSPWASVKE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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