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Report for CCDS51048.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
51048.1 Public Mus musculus 3 Gpsm2 23 108 98 CCDS HistoryNCBI Gene:76123Re-query CCDS DB by CCDS ID:51048.1See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 51048.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000029482.15 ENSMUSP00000029482.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000029482.15Link to Ensembl Protein Viewer:ENSMUSP00000029482.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000029482Re-query CCDS DB by Protein ID:ENSMUSP00000029482
Original member Current member NCBI NM_029522.2 NP_083798.2 Accepted alive Link to Nucleotide Sequence:NM_029522.2Link to Protein Sequence:NP_083798.2Re-query CCDS DB by Nucleotide ID:NM_029522Re-query CCDS DB by Protein ID:NP_083798Link to BLAST:NP_083798.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_083798.2 679 Q8VDU0 679 100% 0 0

Chromosomal Locations for CCDS 51048.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 108679579 108679803 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 108682006 108682223 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 108682672 108682825 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 108686820 108686999 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 108689766 108689836 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 108696949 108697078 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 108697528 108697636 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 108698918 108699073 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 108700664 108700779 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 108700887 108701010 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 108701745 108701887 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 108702399 108702534 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 108702865 108703086 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 108711277 108711332 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2040 nt):
ATGGAGGGAAATTTGATAAGCATGAGGGAAGACCATTCCTTTCATGTCCGCTACAGAATGGAAGCTTCTT
GCCTTGAGCTGGCCTTGGAAGGAGAACGTCTATGTAAATCAGGGGACTGCCGCGCTGGCGTGTCATTTTT
TGAAGCCGCAGTTCAAGTTGGAACTGAAGACCTCAAAACACTCAGTGCTATTTACAGCCAACTGGGCAAT
GCTTACTTCTACTTGCATGACTACGCCAAAGCGTTAGAATACCACCACCATGACTTAACTCTTGCACGGA
CTATTGGAGACCAACTTGGGGAAGCTAAAGCCAGCGGCAATCTCGGAAACACCTTAAAGGTGCTTGGGAA
TTTTGATGAAGCGATAGTGTGTTGCCAGCGACACCTGGATATCTCCAGAGAGCTTAATGACAAGGTGGGA
GAAGCAAGAGCGCTCTACAATCTTGGAAATGTCTATCACGCCAAAGGGAAAAGCTTTGGTTGCCCGGGTC
CGCAGGATACAGGAGAGTTTCCAGAAGACGTGAGAAATGCCCTACAGGCAGCTGTGGATCTCTATGAGGA
AAACCTGTCCTTAGTAACTGCTCTAGGTGACCGAGCAGCACAGGGGCGAGCCTTTGGGAACCTTGGCAAC
ACACACTACCTCCTCGGCAACTTCAGGGATGCAGTTATAGCTCACGAGCAGCGTCTCCTAATTGCAAAGG
AGTTCGGAGATAAGGCGGCTGAGAGAAGAGCGTACAGCAACCTAGGAAATGCATACATATTCCTGGGTGA
ATTCGAAACTGCTTCCGAATACTACAAGAAGACACTGCTGCTGGCTCGGCAGCTTAAAGACAGAGCCGTG
GAAGCTCAGTCTTGCTACAGTCTTGGGAATACATACACTTTGCTTCAGGACTACGAGAAGGCCATCGATT
ACCACCTAAAGCACTTAGCAATCGCCCAAGAGCTCAAGGATCGGATTGGTGAAGGAAGAGCGTGTTGGAG
CTTAGGAAACGCATACACAGCTCTGGGAAATCATGACCAAGCAATGCATTTTGCTGAAAAGCACTTGGAA
ATTTCAAGAGAGGTTGGGGACAAAAGTGGTGAACTGACTGCGCGGCTGAACCTCTCAGACCTGCAGATGG
TTCTTGGTCTGAGCTACAGCACAAATAATTCCATGATGTCTGAGAACATTGAAATTGATGGCAGCTTACA
TGGTGCAGGCGCCAAGCTGGGACGGAGACACAGTATGGAGAACTTGGAACTTATGAAGTTAACACCAGAA
AAGGTGCCGAATTGGAACAGTGAAATTCTCGCTAAACAGAAACCTCTCATTGCCAAACCATCTGCAAAGC
TCCTGTTTGTCAACAGACTGAAGGGCAAAAAGTACAAAAGCGGCAGCGCCTGCACTAAGGTTCTCCAAGA
CGCCAGCAACTCCGTGGACCACCGCGCGCCACGCTCCCAGAAGAAAATCAGTTCAGACACGATTGGAGAT
GAAGGATTCTTTGACTTGCTAAGGCGATTTCAGAGCAACAGGATGGATGACCAGAGGTGCCACTTACAAG
GAAACTGTCGCACAACATCCACAGCAGCTGCTTCTGCTACCCCCAAGTTGATGAAAGCACCGTCTGTCTC
TGTGGTGTCCCCCAACACAGATGAGTTCTTAGATCTTCTTGCTAGCTCACAGAGCCGCCGTCTGGATGAC
CAGAGGGCCAGTTTCAGTAATTTGCCAGGGCTCCGCCTGACAAAAGGCAACAGTCCATCTGTACTTGAGC
GCCTGATGACAAATGACAAGAAAGAGCCTGATGAAGACTTCTTCGACATCCTTGTAAAGTGCCAGGGGTC
AAGATTAGATGATCAAAGATGTGCTCCTCCATCTGCTGCCACTAAGGGGCCGACTGTCCCGGATGAGGAC
TTCTTTAGCCTCATCTTACGCTCTCAAGCTAAAAGAATGGATGAGCAGAGAGTTCTGCTGCAAAGAGATC
CAAACAGAGACAGTGAGTTTGGACTAAAGGAACTTTTGCAAAATAACGCTTTGTTGGAATTTAAGCATTC
GGGAAAATAA

Translation (679 aa):
MEGNLISMREDHSFHVRYRMEASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGN
AYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVG
EARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGN
THYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAV
EAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE
ISREVGDKSGELTARLNLSDLQMVLGLSYSTNNSMMSENIEIDGSLHGAGAKLGRRHSMENLELMKLTPE
KVPNWNSEILAKQKPLIAKPSAKLLFVNRLKGKKYKSGSACTKVLQDASNSVDHRAPRSQKKISSDTIGD
EGFFDLLRRFQSNRMDDQRCHLQGNCRTTSTAAASATPKLMKAPSVSVVSPNTDEFLDLLASSQSRRLDD
QRASFSNLPGLRLTKGNSPSVLERLMTNDKKEPDEDFFDILVKCQGSRLDDQRCAPPSAATKGPTVPDED
FFSLILRSQAKRMDEQRVLLQRDPNRDSEFGLKELLQNNALLEFKHSGK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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