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Report for CCDS4072.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
4072.1 Public Homo sapiens 5 SKIC3 24 110 108 CCDS HistoryNCBI Gene:9652Re-query CCDS DB by CCDS ID:4072.1Re-query CCDS DB by GeneID:9652See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 4072.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000358746.7 ENSP00000351596.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000358746.7Link to Ensembl Protein Viewer:ENSP00000351596.3Re-query CCDS DB by Nucleotide ID:ENST00000358746Re-query CCDS DB by Protein ID:ENSP00000351596
Original member Current member EBI ENST00000649566.1 ENSP00000497948.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000649566.1Link to Ensembl Protein Viewer:ENSP00000497948.1Re-query CCDS DB by Nucleotide ID:ENST00000649566Re-query CCDS DB by Protein ID:ENSP00000497948
Original member Current member NCBI NM_014639.4 NP_055454.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_014639.4Link to Protein Sequence:NP_055454.1Re-query CCDS DB by Nucleotide ID:NM_014639Re-query CCDS DB by Protein ID:NP_055454Link to BLAST:NP_055454.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_055454.1 1564 Q6PGP7 1564 100% 0 0

Chromosomal Locations for CCDS 4072.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 95464607 95464681 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 95467866 95467989 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 95469780 95469910 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 95478290 95478442 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 95482473 95482631 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 95484724 95484845 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 95490908 95491036 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 95494682 95494793 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 95494964 95495017 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 95497416 95497488 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 95498370 95498591 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 95502880 95503003 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 95503814 95503938 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 95506934 95507011 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 95509594 95509687 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 95512477 95512618 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 95513571 95513645 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 95514855 95514923 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 95516353 95516409 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 95516525 95516586 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 95516672 95516750 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 95516916 95517060 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 95517146 95517322 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 95520716 95520818 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 95522054 95522307 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 95523202 95523326 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 95523655 95523834 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 95524465 95524591 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 95525398 95525501 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 95525587 95525673 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 95528013 95528152 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 95529001 95529102 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 95530089 95530229 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 95536817 95536925 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 95537043 95537141 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 95540690 95540830 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 95541305 95541380 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 95541815 95541906 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 95543184 95543327 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 95547061 95547150 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4695 nt):
ATGTCCAGCAAGGAAGTGAAGACTGCTCTAAAAAGTGCTAGAGATGCAATCAGAAACAAAGAATACAAAG
AAGCTTTGAAACACTGTAAGACAGTGTTAAAGCAAGAGAAAAATAACTATAATGCCTGGGTTTTTATTGG
CGTTGCTGCAGCTGAACTAGAACAACCTGATCAGGCCCAGAGTGCCTATAAAAAAGCTGCTGAATTAGAG
CCAGACCAATTACTAGCTTGGCAGGGGTTAGCAAACTTGTATGAGAAATATAATCACATAAATGCTAAGG
ATGACTTGCCTGGTGTTTACCAAAAGCTCCTGGATCTTTATGAGAGTGTTGACAAGCAGAAGTGGTGTGA
TGTCTGCAAGAAACTTGTGGATCTATATTACCAAGAAAAGAAACACCTAGAGGTGGCTCGAACATGGCAC
AAGTTGATAAAAACACGGCAGGAACAAGGTGCAGAAAATGAAGAGCTTCATCAACTATGGAGAAAATTGA
CTCAGTTCCTGGCTGAAAGTACAGAGGACCAGAATAATGAAACTCAGCAATTGCTTTTTACTGCTTTTGA
GAATGCACTGGGATTATCAGATAAGATTCCTAGTGAAGATCACCAAGTACTTTATAGGCATTTCATTCAG
AGTTTATCCAAATTTCCTCATGAGTCTGCTAGATTGAAGAAGGCCTGTGAAGGAATGATAAACATCTATC
CTACTGTACAGTATCCATTAGAAGTGCTTTGTTTGCATTTAATTGAATCAGGAAATCTTACTGATGAGGG
GCAGCAGTATTGTTGTAGATTAGTGGAAATGGATTCAAAAAGTGGTCCAGGCCTCATTGGCTTAGGCATT
AAAGCATTACAAGACAAAAAGTATGAAGATGCTGTTAGGAACCTAACAGAAGGGTTAAAGGAAAGCCCTG
TCTGCACAAGTGGATGGTATCATCTGGCAGAAGCCCAAGTCAAAATGCATAGACCTAAAGAAGCTGTTCT
TTCATGCAGTCAAGCTCTGAAGATCGTAGATAATCTTGGTGCGTCTGGTAACAGTCTTTATCAGAGGAAT
CTTTGTCTTCATTTGAAAGCAGAGGCTTTGATTAAACTCTCAGATTATGACTCTTCAGAGGAAGCAATTC
GTACGCTTGATCAGATTTCTGATGCAGATAATATCCCAGGACTTTTGGTTCTCAAAAGCTTGGCCTATCG
GAACAAAGGTTCATTTGATGAAGCTGCAAAGATTATGGAAGACCTTCTCTCTTCTTACCCTGACCTAGCT
GAAGTTCATGCCCTTGAGGCTTTGATTCATTTCACCAAAAAGGACTATCTACAAGCAGAAAAATGTTTTC
AGAGAGCTCTTGAGAAAGATACCGAAGTTGCAGAATATCATTACCAACTTGGATTAACATACTGGTTCAT
GGGTGAAGAGACAAGAAAAGATAAAACAAAGGCTCTTACCCACTTTCTGAAGGCTGCAAGACTGGATACA
TATATGGGCAAAGTTTTCTGCTATTTAGGTCATTATTATAGAGACGTAGTGGGAGATAAAAACAGAGCTC
GTGGATGTTATAGGAAAGCCTTTGAATTAGATGACACTGATGCTGAATCTGGAGCTGCAGCAGTTGACCT
AAGTGTGGAGCTTGAAGATATGGAAATGGCTTTAGCTATCCTAACAACAGTAACTCAAAAGGCAAGTGCT
GGAACGGCAAAATGGGCCTGGCTTAGGCGAGGACTATACTATTTGAAAGCTGGTCAGCATTCTCAAGCAG
TGGCTGATTTACAGGCAGCATTAAGAGCAGACCCAAAGGACTTCAATTGTTGGGAATCGTTAGGAGAAGC
ATACTTAAGCAGAGGAGGCTACACAACAGCCTTGAAGTCCTTCACAAAAGCCAGTGAGCTGAACCCAGAA
TCCATATACAGTGTGTTTAAGGTTGCAGCAATACAGCAAATCCTAGGCAAATATAAGGAGGCTGTAGCTC
AATACCAGATGATCATTAAAAAGAAAGAAGATTATGTGCCTGCTTTAAAAGGTTTGGGTGAATGCCATCT
TATGATGGCAAAAGCAGCTCTAGTTGATTATCTTGATGGAAAAGCCGTAGACTACATAGAAAAAGCACTG
GAATATTTTACTTGTGCTCTACAGCATCGAGCTGATGTGTCCTGCCTCTGGAAGCTAGCTGGGGATGCTT
GTACCTGTCTGTATGCTGTCGCACCATCTAAAGTGAATGTTCATGTTTTAGGAGTCCTTCTAGGTCAGAA
AGAAGGAAAACAAGTATTAAAGAAAAATGAGCTCCTCCACCTTGGAGGAAGGTGTTATGGTCGTGCATTA
AAACTGATGTCTACATCTAATACATGGTGTGACCTTGGAATTAATTATTATCGCCAAGCACAACATCTAG
CAGAAACAGGCAGCAACATGAATGATCTTAAGGAGTTGCTGGAGAAATCTTTACATTGTCTGAAAAAAGC
AGTGAGACTCGACAGTAATAATCACTTATACTGGAATGCTCTTGGTGTGGTTGCATGTTACAGTGGTATT
GGAAATTATGCCCTTGCTCAGCACTGTTTCATCAAATCAATCCAGTCAGAACAAATTAATGCTGTTGCAT
GGACCAACTTGGGAGTGTTATACCTCACAAATGAAAACATTGAGCAAGCTCATGAGGCTTTCAAAATGGC
TCAATCCCTTGATCCATCTTATTTAATGTGCTGGATTGGACAAGCTCTTATTGCTGAGGCAGTTGGAAGT
TATGACACCATGGATCTCTTCAGGCACACTACAGAACTAAATATGCATACTGAAGGAGCATTAGGTTATG
CGTATTGGGTCTGCACAACATTGCAAGATAAAAGCAACAGAGAAACAGAGCTGTACCAGTACAACATCCT
CCAGATGAATGCTATTCCAGCAGCACAAGTTATTTTGAATAAATATGTAGAAAGAATTCAGAATTATGCC
CCAGCTTTCACAATGTTGGGTTACTTAAACGAACATCTACAACTGAAAAAGGAAGCAGCAAATGCATACC
AAAGGGCAATTTTGTTGTTACAGACTGCAGAAGACCAAGATACTTACAATGTTGCAATAAGAAATTACGG
CAGATTGTTATGTTCCACTGGTGAATATGATAAAGCTATCCAGGCTTTTAAGTCAACACCCCTTGAAGTG
TTAGAAGACATCATAGGTTTTGCATTGGCTTTATTCATGAAGGGGCTTTATAAAGAGAGCAGCAAAGCCT
ATGAGAGAGCCTTGTCTATTGTTGAATCGGAGCAAGACAAAGCCCATATCTTGACAGCTCTGGCAATAAC
TGAATATAAACAAGGAAAAACGGATGTAGCCAAGACATTGCTATTTAAATGCTCTATCTTAAAGGAACCA
ACCACAGAAAGCCTTCAAGCCCTGTGTGCTCTAGGGTTGGCAATGCAGGATGCTACACTGTCAAAAGCAG
CACTTAATGAGTTACTGAAGCACATCAAACACAAAGACAGTAATTATCAGAGGTGCCTTCTTACATCAGC
GATTTATGCACTCCAAGGCCGCAGTGTGGCTGTGCAAAAACAAATATCTAAAGCTGTTCACAGCAACCCT
GGTGACCCTGCTCTTTGGTCTCTGTTGTCTCGAGTTGTTGCACAGTATGCTCAACGAAATGCAAAGGGAG
GTGTTGTAGCAGGAAATGTGGCTCATATTCTGGACTCAAATCATGGAAAGAAGGCATTACTGTACACTGC
GGTAAATCAGTTGGCTATGGGAAGCAGTTCAGCAGAAGATGAAAAAAATACTGCACTAAAGACCATTCAG
AAGGCAGCTCTCCTTTCTCCAGGTGATCCTGCTATCTGGGCTGGGCTAATGGCAGCCTGTCACGCTGATG
ATAAACTGGCCTTAGTGAACAACACTCAGCCAAAGAGGATAGATTTATACTTGGCACTGTTATCTGCTGT
TTCTGCTTCAATTAAAGACGAAAAATTCTTTGAAAATTACAACCAGTCCCTTGAAAAGTGGTCTCTCTCA
CAAGCTGTCACTGGTCTAATAGACACAGGAAGAATATCTGAAGCTGAAACTCTCTGCACAAAGAATTTAA
AAAGTAACCCTGATCAGCCAGCCGTTATCTTACTTTTGAGACAAGTTCAGTGTAAACCACTCCTGGAGTC
ACAAAAGCCACTCCCAGATGCTGTACTTGAAGAACTACAAAAAACAGTCATGTCCAACTCAACCTCTGTT
CCAGCTTGGCAGTGGCTGGCACATGTGTATCAATCCCAAGGAATGATGAGAGCTGCAGAGATGTGTTACA
GAAAGAGTCTACAATTGGCATCCCAACGGGGCAGTTGGAGTGGGAAGCTCTCAAGTCTGTTGAGACTAGC
ACTACTTGCATTAAAAGTCTGTATGGCTAACATTTCCAATGATCACTGGCCATCTTTGGTTCAAGAGGCT
ACAACTGAGGCCTTGAAGCTTTGCTTTTGTCCACTGGCTGTTCTTTTACAAGCTTTGTTACAATTCAAAC
GCAAAATGGGGGCAAGAGAGACACGGCGTCTTTTGGAAAGAGTGGTATATCAGCCTGGGTATCCCAAATC
TATTGCATCAACTGCACGTTGGTACCTACTGAGACACTTATATGCCAAAGATGACTATGAGCTTATTGAC
GTGCTGGTAAACAATGCCAAAACTCATGGAGATACAAGAGCATTGGAACTGAATCAGAGATTGTCCTCAC
AATAA

Translation (1564 aa):
MSSKEVKTALKSARDAIRNKEYKEALKHCKTVLKQEKNNYNAWVFIGVAAAELEQPDQAQSAYKKAAELE
PDQLLAWQGLANLYEKYNHINAKDDLPGVYQKLLDLYESVDKQKWCDVCKKLVDLYYQEKKHLEVARTWH
KLIKTRQEQGAENEELHQLWRKLTQFLAESTEDQNNETQQLLFTAFENALGLSDKIPSEDHQVLYRHFIQ
SLSKFPHESARLKKACEGMINIYPTVQYPLEVLCLHLIESGNLTDEGQQYCCRLVEMDSKSGPGLIGLGI
KALQDKKYEDAVRNLTEGLKESPVCTSGWYHLAEAQVKMHRPKEAVLSCSQALKIVDNLGASGNSLYQRN
LCLHLKAEALIKLSDYDSSEEAIRTLDQISDADNIPGLLVLKSLAYRNKGSFDEAAKIMEDLLSSYPDLA
EVHALEALIHFTKKDYLQAEKCFQRALEKDTEVAEYHYQLGLTYWFMGEETRKDKTKALTHFLKAARLDT
YMGKVFCYLGHYYRDVVGDKNRARGCYRKAFELDDTDAESGAAAVDLSVELEDMEMALAILTTVTQKASA
GTAKWAWLRRGLYYLKAGQHSQAVADLQAALRADPKDFNCWESLGEAYLSRGGYTTALKSFTKASELNPE
SIYSVFKVAAIQQILGKYKEAVAQYQMIIKKKEDYVPALKGLGECHLMMAKAALVDYLDGKAVDYIEKAL
EYFTCALQHRADVSCLWKLAGDACTCLYAVAPSKVNVHVLGVLLGQKEGKQVLKKNELLHLGGRCYGRAL
KLMSTSNTWCDLGINYYRQAQHLAETGSNMNDLKELLEKSLHCLKKAVRLDSNNHLYWNALGVVACYSGI
GNYALAQHCFIKSIQSEQINAVAWTNLGVLYLTNENIEQAHEAFKMAQSLDPSYLMCWIGQALIAEAVGS
YDTMDLFRHTTELNMHTEGALGYAYWVCTTLQDKSNRETELYQYNILQMNAIPAAQVILNKYVERIQNYA
PAFTMLGYLNEHLQLKKEAANAYQRAILLLQTAEDQDTYNVAIRNYGRLLCSTGEYDKAIQAFKSTPLEV
LEDIIGFALALFMKGLYKESSKAYERALSIVESEQDKAHILTALAITEYKQGKTDVAKTLLFKCSILKEP
TTESLQALCALGLAMQDATLSKAALNELLKHIKHKDSNYQRCLLTSAIYALQGRSVAVQKQISKAVHSNP
GDPALWSLLSRVVAQYAQRNAKGGVVAGNVAHILDSNHGKKALLYTAVNQLAMGSSSAEDEKNTALKTIQ
KAALLSPGDPAIWAGLMAACHADDKLALVNNTQPKRIDLYLALLSAVSASIKDEKFFENYNQSLEKWSLS
QAVTGLIDTGRISEAETLCTKNLKSNPDQPAVILLLRQVQCKPLLESQKPLPDAVLEELQKTVMSNSTSV
PAWQWLAHVYQSQGMMRAAEMCYRKSLQLASQRGSWSGKLSSLLRLALLALKVCMANISNDHWPSLVQEA
TTEALKLCFCPLAVLLQALLQFKRKMGARETRRLLERVVYQPGYPKSIASTARWYLLRHLYAKDDYELID
VLVNNAKTHGDTRALELNQRLSSQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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