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Report for CCDS51680.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
51680.1 Public Mus musculus 5 1700123K08Rik 23 108 98 CCDS HistoryNCBI Gene:76658Re-query CCDS DB by CCDS ID:51680.1See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 51680.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000031501.1 ENSMUSP00000031501.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000031501.1Link to Ensembl Protein Viewer:ENSMUSP00000031501.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000031501Re-query CCDS DB by Protein ID:ENSMUSP00000031501
Original member Current member NCBI NM_029693.2 NP_083969.1 Accepted alive Link to Nucleotide Sequence:NM_029693.2Link to Protein Sequence:NP_083969.1Re-query CCDS DB by Nucleotide ID:NM_029693Re-query CCDS DB by Protein ID:NP_083969Link to BLAST:NP_083969.1

Chromosomal Locations for CCDS 51680.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 138561965 138562007 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 138562287 138562551 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 138562819 138563015 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 138563540 138563587 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 138564143 138564345 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 138564529 138564660 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (888 nt):
ATGTTCTCCTGTTTTCAGGCTTCCAGAGGCTCCGGCCACAAAAAAGCCAAGAGAGGTCGCCTTGTCTGCT
TTTGGAGACGTTTGATTCGCCCTCTGACACACTTGAGGCATGCTTCCCACAGCGAGCCCAAGGTCTGTTG
TGAAAATGATCAGGAGCCAGACTCTATGCCCAAGCACCCCCAGTTCAACTACAAGAGTCGAGAATACGTT
CAACAGATGATCCACTACATACCAGCTGCTATTCAGAACCGTGACCACCTCTGTCTCGACATTTTTGTTG
CCATGTACCAAACGTATGCTACCACCTGGGAGGTGCTGGACCTGCTGATGAAAACGTATGCATCCTTCCA
GCCAGACTTCGTGGAAGACCAGCAAACTAAGAGAGCCATATTCAGCTTTCTGTTCGGCTGGTTTCAGAAA
TTCCCCCAGGATTTTTATGAGTCCCCAGACCTGGCTGTTTTGAGTCAGTTCACGGAGTACGTGAGGCTCA
ATGTGCCTTCCCCAGACATAGATACCCAAGCCAGGGAGCCTCCCTCCATGTTGGAGGATCAGGAGGCCAT
CGCACTTAAACTTGAGGAAGATCCCCTAGGGCAGGATGCCTCTGGGAGGCAGGAGACTCTGGCTCTGAGG
CCAGCTTCTATGGCAGAGCCACAGGGAGACGAAAAACCCGGAGAGAACACTGAGCTTGTGAAAAGAGCAG
TTCTGGATCCCTTTGAACCAAAAGCCACAATAGAGCTGCCTCCGTCTTTACATCAAGCTCTGCCCACATC
AGCTGATACATACTCACCTGTAGATGTGGCAATAGATGAAGCTGCAGATGAGGCTGCAGATGTTTCACCT
GCCAGTGGTACAATCTACTTATGTTTTACCCGTGGACTGCAACTTTGA

Translation (295 aa):
MFSCFQASRGSGHKKAKRGRLVCFWRRLIRPLTHLRHASHSEPKVCCENDQEPDSMPKHPQFNYKSREYV
QQMIHYIPAAIQNRDHLCLDIFVAMYQTYATTWEVLDLLMKTYASFQPDFVEDQQTKRAIFSFLFGWFQK
FPQDFYESPDLAVLSQFTEYVRLNVPSPDIDTQAREPPSMLEDQEAIALKLEEDPLGQDASGRQETLALR
PASMAEPQGDEKPGENTELVKRAVLDPFEPKATIELPPSLHQALPTSADTYSPVDVAIDEAADEAADVSP
ASGTIYLCFTRGLQL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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