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Report for CCDS28902.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28902.1 Public Mus musculus 17 Arrdc5 23 108 98 CCDS HistoryNCBI Gene:76920Re-query CCDS DB by CCDS ID:28902.1See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 28902.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000097303.2 ENSMUSP00000094906.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000097303.2Link to Ensembl Protein Viewer:ENSMUSP00000094906.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000097303Re-query CCDS DB by Protein ID:ENSMUSP00000094906
Original member NCBI NM_029799.1 NP_084075.1 Updated not alive Link to Nucleotide Sequence:NM_029799.1Link to Protein Sequence:NP_084075.1Re-query CCDS DB by Nucleotide ID:NM_029799Re-query CCDS DB by Protein ID:NP_084075
Current member NCBI NM_029799.2 NP_084075.1 Accepted alive Link to Nucleotide Sequence:NM_029799.2Link to Protein Sequence:NP_084075.1Re-query CCDS DB by Nucleotide ID:NM_029799Re-query CCDS DB by Protein ID:NP_084075Link to BLAST:NP_084075.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_084075.1 325 Q497K5 325 100% 0 0

Chromosomal Locations for CCDS 28902.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 56294146 56294664 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 56297827 56298032 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 56299991 56300243 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (978 nt):
ATGTCTGTGGTGAAGTCCATCGAGGTAGTGCTGCCCCAAGATGCGGTCTACCTGGCCGGCTCTATCATAG
ACGGGCAGGTGGTCCTCACCCTCAACAGTACCCTCGTGGACCCCGTCGTGAAGGTGGAGCTTGTCGGTAG
GGGTTACGTTGAGTGGAACGAAGAAATTGGAGAGACCCGTGATTATAGTAGAGATGTTATTTGCAATAAT
AAGGCAGATTACGTACATAAAACAAAAACATTCCCAATAAAAGATAATTGGTTAAGGGCAGGCAGCCACA
CCTTTGACTTCCATTTCAACTTACCTCCCAGGCTCCCGTCCACCTTCAACAGTAAGATCGGCCACATCTC
CTACTTTGTGCAGGCCCTGTGCTTGGACCGGGAGCATATCCTGGCCAAGAAGAAGCTGTACCTGCTGGTC
CAAGGGATTTCTGAGTTCCGCCAGAGGAATCTAAGTGAGAACTCCGTGTCTGTAGAAGCTGAGAAGAAGG
TGTCATACAACTGCTGCAGTCAGGGCTGGGTGAGCCTGCATGTGCAGATGAGCAAGAACACCTATGTGCC
GGGCGAGAAGGTGACATTCACATCAGAGATCCGCAATCACACGGGCAAGTACATCAAGACCGTGGTGTTC
GCCCTCTATGCCCATGTGCAGTACGAGGGCTTCACGCCAAGTGCCGAGAGGCGCCGGCGGGCAGACAGCA
GCGAGCTGCTGCGACAGATGGCCAACGCACGGATTCCAGCCTTCAACAGTACCACAGTGGTTAGTGCCTT
CAACCTGCCGCTGGTTTTGTCTGTGAGCAGTGGCTCCCAGGAAAATGAGATCATGAGGACCAGCTATGAG
CTTGTAGTCACGATTCACCTCCCCTGGTCTTTGTCGACAGTCAAAGCCCGACTCCCCATCATCATCACCA
GCACCAGGGAAGGCCAGGCCGACTGCCCCCGGCTGGATGAGCTGCCATATGAGGACCATATGGTTTGA

Translation (325 aa):
MSVVKSIEVVLPQDAVYLAGSIIDGQVVLTLNSTLVDPVVKVELVGRGYVEWNEEIGETRDYSRDVICNN
KADYVHKTKTFPIKDNWLRAGSHTFDFHFNLPPRLPSTFNSKIGHISYFVQALCLDREHILAKKKLYLLV
QGISEFRQRNLSENSVSVEAEKKVSYNCCSQGWVSLHVQMSKNTYVPGEKVTFTSEIRNHTGKYIKTVVF
ALYAHVQYEGFTPSAERRRRADSSELLRQMANARIPAFNSTTVVSAFNLPLVLSVSSGSQENEIMRTSYE
LVVTIHLPWSLSTVKARLPIIITSTREGQADCPRLDELPYEDHMV


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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