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Report for CCDS49153.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
49153.1 Public Mus musculus 12 Ifi27l2a 23 108 98 CCDS HistoryNCBI Gene:76933Re-query CCDS DB by CCDS ID:49153.1See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 49153.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000055071.8 ENSMUSP00000054698.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000055071.8Link to Ensembl Protein Viewer:ENSMUSP00000054698.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000055071Re-query CCDS DB by Protein ID:ENSMUSP00000054698
Original member Current member NCBI NM_029803.3 NP_084079.1 Accepted alive Link to Nucleotide Sequence:NM_029803.3Link to Protein Sequence:NP_084079.1Re-query CCDS DB by Nucleotide ID:NM_029803Re-query CCDS DB by Protein ID:NP_084079Link to BLAST:NP_084079.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_084079.1 90 Q8R412 90 100% 0 0

Chromosomal Locations for CCDS 49153.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 103442310 103442383 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 103442832 103442993 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 103443482 103443511 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 103443627 103443633 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (273 nt):
ATGTTGGGAACACTGTTTGGCTCTGCCATAGGAGGAGCTCTGGCTGTGGCAGGGGCACCTGTGGCCCTGG
CT
GCCATGGGCTTCACTGGGACAGGCATTGCAGCTGCCTCCATAGCAGCCAAGATGATGTCTGCTGCAGC
A
ATTGCCAATGGAGGTGGAGTTGCAGCAGGAAGCCTGGTAGCCACACTCCAATCAGCAGGGGTCCTTGGA
CTC
TCCACATCAACAAATGCCATCCTAGGGGCTGCTGGGGCAGCTGTTGGAGCCTTGCTCTGA


Translation (90 aa):
MLGTLFGSAIGGALAVAGAPVALAAMGFTGTGIAAASIAAKMMSAAAIANGGGVAAGSLVATLQSAGVLG
L
STSTNAILGAAGAAVGALL




Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser