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Report for CCDS39001.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39001.1 Public Mus musculus 5 1700109H08Rik 23 108 98 CCDS HistoryNCBI Gene:77036Re-query CCDS DB by CCDS ID:39001.1See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 39001.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000008451.11 ENSMUSP00000008451.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000008451.11Link to Ensembl Protein Viewer:ENSMUSP00000008451.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000008451Re-query CCDS DB by Protein ID:ENSMUSP00000008451
Original member Current member NCBI NM_029843.3 NP_084119.1 Accepted alive Link to Nucleotide Sequence:NM_029843.3Link to Protein Sequence:NP_084119.1Re-query CCDS DB by Nucleotide ID:NM_029843Re-query CCDS DB by Protein ID:NP_084119Link to BLAST:NP_084119.1

Chromosomal Locations for CCDS 39001.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 3571753 3571810 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 3575623 3575778 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 3577240 3577344 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 3580405 3580556 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 3582143 3582247 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 3584240 3584296 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (633 nt):
ATGGAGCAGAGGGCTCTGAAAAAAATGGTGGAATCCATCAGGAAAACTGTCAAGAGCTTCAAGAAATTTG
AAGTTGAATGTCTCATACGACTTTTCTATAGCTTGGTGGGATGCCCTGTTGGAAAGATGGATAATACCGG
GCTGGACTGCAACACATTTCGAGGAGTCCTGCAGAACATATTCGGAATGACTAACGATATGTTGATGAAT
AGAGTGTTCTTTGTATTTGACAAAGATGGTGATGGCTATGTAAATTTAGAAGAGTGGATTAAAGGCTTGG
CAGTGTTTCTCCGAGGGACTTTTGAAGAGAAGATGAGATTCTGTTTTGAAGTTTATTATTTAAACGGAGA
TGCTTATATTTCCCAAGAAAAAATTTTTGACATGTTGAAGAGTAGTCTCTTCCAGCACTCTCCTGAAGAA
GAGAATGAAGAAGGAGTAAAGGATTTGGTAGAAATAAGCCTGAAGAAGATGGATTATGACAATGATGGCA
AGATCTCTTTTGCAGACTTTGAAAAAGCAGTGAAAGAAGACGGACTTTTGTTGGAGGCATTTGGACCATG
TTTACCAGATGCAAAGTTCTGCTTTCACTTTGAAGCCCTGGTGTTCAAAAACAACCCCCCTGCCAGTCTC
TGA

Translation (210 aa):
MEQRALKKMVESIRKTVKSFKKFEVECLIRLFYSLVGCPVGKMDNTGLDCNTFRGVLQNIFGMTNDMLMN
RVFFVFDKDGDGYVNLEEWIKGLAVFLRGTFEEKMRFCFEVYYLNGDAYISQEKIFDMLKSSLFQHSPEE
ENEEGVKDLVEISLKKMDYDNDGKISFADFEKAVKEDGLLLEAFGPCLPDAKFCFHFEALVFKNNPPASL


Links Key
 Links to:   History report
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  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
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