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Report for CCDS22818.3 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22818.3 Public Mus musculus 9 Mtmr2 23 108 98 CCDS HistoryNCBI Gene:77116Re-query CCDS DB by CCDS ID:22818.3See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 22818.3

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000034396.13 ENSMUSP00000034396.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000034396.13Link to Ensembl Protein Viewer:ENSMUSP00000034396.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000034396Re-query CCDS DB by Protein ID:ENSMUSP00000034396
Original member NCBI NM_023858.3 NP_076347.3 Updated not alive Link to Nucleotide Sequence:NM_023858.3Link to Protein Sequence:NP_076347.3Re-query CCDS DB by Nucleotide ID:NM_023858Re-query CCDS DB by Protein ID:NP_076347
Current member NCBI NM_023858.4 NP_076347.3 Accepted alive Link to Nucleotide Sequence:NM_023858.4Link to Protein Sequence:NP_076347.3Re-query CCDS DB by Nucleotide ID:NM_023858Re-query CCDS DB by Protein ID:NP_076347Link to BLAST:NP_076347.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_076347.3 643 Q9Z2D1 643 100% 0 0

Chromosomal Locations for CCDS 22818.3

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 13749321 13749400 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 13782277 13782382 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 13785852 13785927 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 13788581 13788675 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 13789040 13789150 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 13791979 13792080 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 13793149 13793232 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 13795237 13795386 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 13795958 13796146 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 13799150 13799335 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 13799876 13800082 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 13801915 13802007 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 13803425 13803538 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 13804806 13804982 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 13805375 13805536 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1932 nt):
ATGGAGAAGAGCTCCAGCTGCGAGAGTCTCGGCGCGCAGCTCCCGGCGGCAAGGCTGCCCAGCGAGGACT
CACTGTCCAGTGCTTCTACTTCTCATTCAGAGAACTCGGTGCATACCAAATCAGCTTCTGCTATATCATC
AGATTCCATTTCAACCTCTGCAGACAACTTTTCTCCTGACTTGAGGGTCCTGAGGGAGGCAAACAAGTTA
GCAGAAATGGAGGAACCAGCCCTGCTTCCAGGAGAGAACATTAAAGATATGGCCAAAGATGTGACTTACA
TATGTCCATTCACTGGTGCTGTGCGAGGAACGCTGACTGTCACAAGTTACAGGTTATATTTCAAGAGCAT
GGAGCGGGACCCCCCATTTGTTCTAGATGCTTCTCTTGGAGTGATAAGTAGAGTAGAAAAAATTGGTGGT
GCATCTAGCCGAGGTGAAAACTCCTATGGCCTGGAAACTGTGTGCAAGGATATCAGGAACTTGCGATTTG
CTCATAAACCGGAGGGGCGAACAAGAAGATCCATATTTGAGAATCTAATGAAATATGCATTTCCTGTGTC
TAATGGCTTGCCTCTTTTTGCTTTTGAGTATAAAGAAGTATTCCCCGAAAATGGGTGGAAACTGTATGAC
CCCCTTCTAGAGTACAGAAGGCAGGGAATTCCAAATGAAAGCTGGAGAATAACAAAGATAAATGAACGCT
ATGAACTCTGTGACACATATCCTGCCCTCTTGGTTGTGCCAGCAAACATTCCTGATGAGGAGCTAAAGAG
AGTGGCATCCTTTAGGTCACGGGGCCGGATCCCAGTTTTATCCTGGATTCATCCTGAAAGTCAAGCCACA
GTCACTCGCTGCAGCCAGCCCATGGTTGGAGTGAGTGGGAAGCGCAGCAAAGAAGATGAGAAGTACCTTC
AGGCCATCATGGACTCCAATGCCCAGTCTCACAAAATATTTATCTTTGATGCTCGGCCAAGTGTCAATGC
GGTTGCCAATAAGGCAAAGGGGGGAGGTTATGAAAGTGAAGATGCCTATCAAAATGCAGAACTCGTTTTT
CTGGATATTCATAATATCCATGTTATGAGAGAATCATTACGGAAGCTTAAGGAGATTGTGTACCCCACCA
TTGAAGAAACTCACTGGTTGTCTAACTTAGAATCTACACACTGGCTGGAACACATTAAGCTCATTCTTGC
AGGGGCTCTTAGGATTGCTGACAAGGTCGAGTCTGGGAAGACGTCTGTGGTGGTACACTGCAGTGATGGA
TGGGATCGCACAGCTCAGCTCACTTCCCTGGCCATGCTCATGTTGGATGGATACTACCGAACCATACGAG
GATTTGAAGTCCTTGTGGAGAAAGAATGGCTGAGCTTTGGACATAGATTCCAACTAAGAGTTGGCCATGG
AGATAAGAACCATGCTGACGCAGACAGGTCACCTGTTTTCCTTCAGTTTATTGACTGTGTCTGGCAAATG
ACAAGACAGTTCCCTACCGCATTTGAATTCAATGAGTATTTTCTCATTACCATCCTGGACCACTTGTACA
GCTGTTTATTTGGAACATTCCTTTGTAACAGCGAACAGCAGAGGGGGAAAGAGAATCTTCCTAAGAAGAC
AGTGTCACTGTGGTCCTATATAAACAGCCAGCTGGAAGACTTTACTAATCCTCTTTATGGAAGCTACTCC
AATCATGTCCTTTACCCAGTAGCCAGCATGCGCCACCTAGAGCTCTGGGTGGGATATTATATAAGGTGGA
ACCCCCGGATGAAACCTCAGGAACCTATCCACAGCAGATACAAAGAACTTCTTGCCAAAAGAGCAGAGCT
TCAAAGAAAAGTAGAGGAACTTCAGAGAGAAATTTCCAACCGCTCAACCTCCTCTTCAGAGAGAGCCAGC
TCTCCTGCACAGTGTGTGACTCCTGTCCAAACTGTTGTATGA

Translation (643 aa):
MEKSSSCESLGAQLPAARLPSEDSLSSASTSHSENSVHTKSASAISSDSISTSADNFSPDLRVLREANKL
AEMEEPALLPGENIKDMAKDVTYICPFTGAVRGTLTVTSYRLYFKSMERDPPFVLDASLGVISRVEKIGG
ASSRGENSYGLETVCKDIRNLRFAHKPEGRTRRSIFENLMKYAFPVSNGLPLFAFEYKEVFPENGWKLYD
PLLEYRRQGIPNESWRITKINERYELCDTYPALLVVPANIPDEELKRVASFRSRGRIPVLSWIHPESQAT
VTRCSQPMVGVSGKRSKEDEKYLQAIMDSNAQSHKIFIFDARPSVNAVANKAKGGGYESEDAYQNAELVF
LDIHNIHVMRESLRKLKEIVYPTIEETHWLSNLESTHWLEHIKLILAGALRIADKVESGKTSVVVHCSDG
WDRTAQLTSLAMLMLDGYYRTIRGFEVLVEKEWLSFGHRFQLRVGHGDKNHADADRSPVFLQFIDCVWQM
TRQFPTAFEFNEYFLITILDHLYSCLFGTFLCNSEQQRGKENLPKKTVSLWSYINSQLEDFTNPLYGSYS
NHVLYPVASMRHLELWVGYYIRWNPRMKPQEPIHSRYKELLAKRAELQRKVEELQREISNRSTSSSERAS
SPAQCVTPVQTVV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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