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Report for CCDS52796.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
52796.1 Public Mus musculus 9 Ddx10 23 108 98 CCDS HistoryNCBI Gene:77591Re-query CCDS DB by CCDS ID:52796.1See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 52796.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000065630.7 ENSMUSP00000065198.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000065630.7Link to Ensembl Protein Viewer:ENSMUSP00000065198.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000065630Re-query CCDS DB by Protein ID:ENSMUSP00000065198
Original member Current member NCBI NM_029936.2 NP_084212.2 Accepted alive Link to Nucleotide Sequence:NM_029936.2Link to Protein Sequence:NP_084212.2Re-query CCDS DB by Nucleotide ID:NM_029936Re-query CCDS DB by Protein ID:NP_084212Link to BLAST:NP_084212.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_084212.2 875 Q80Y44 875 100% 0 0

Chromosomal Locations for CCDS 52796.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 53099085 53099262 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 53117153 53117289 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 53149503 53149559 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 53157171 53157332 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 53159898 53160017 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 53204059 53204530 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 53207466 53207554 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 53209689 53209776 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 53213236 53213337 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 53223660 53223744 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 53225473 53225635 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 53229125 53229251 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 53233828 53234017 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 53235263 53235383 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 53236400 53236558 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 53238048 53238178 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 53240477 53240537 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 53247818 53248003 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2628 nt):
ATGGGCAAAACGGTTGCTTCTCTGGGTCAGGGAACCCGACCCGACCCGGTGCGGAGCTTTAATCGCTGGA
AGAAAAAACACAGCCACAGGCAGCACCAAAAGAAGGAGCGGAGGAAGCAGCTAAAGAAGCCGGAATGGCA
GGTCGAGCGCGAGGGGATCAGCCGCCTCATGCAAAACTACGAGAAGATAAATGTAAATGAAATTACAAGA
TTTTCAGATTTCCCTTTGTCCAAAAAAACATTGAAAGGTTTGCAAGAAGCACAGTACCGCTTGGTAACAG
AGATACAGAAGCAGACCATAGGGTTGGCTTTGCAAGGTAAAGATGTGCTTGGTGCTGCCAAAACTGGATC
TGGCAAGACTTTGGCTTTTCTTGTTCCGGTGTTGGAAGCCTTATACCGCCTGCAGTGGACTTCAACAGAT
GGCCTGGGAGTTCTGATAATATCACCTACTCGAGAACTGGCCTATCAGACATTTGAGGTTCTACGCAAAG
TAGGGAAGAATCATGATTTTTCAGCTGGTCTCATCATTGGTGGGAAGGATCTGAAACATGAAGCTGAGAG
GATCAACAACATAAACATACTGGTTTGCACACCAGGTCGACTTCTTCAACACATGGATGAAACAATATGT
TTTCATGCCACCAATCTTCAGATGTTAGTTCTTGATGAGGCAGATAGAATCTTGGATATGGGCTTTGCTG
ATACCATGAATGCTATTATTGAAAATCTTCCCAAGAAACGCCAGACTTTACTGTTCTCAGCCACACAGAC
CAAATCTGTAAAGGACCTTGCGCGCTTGAGTTTGAAAGACCCTGAGTATGTCTGGGTTCATGAAAAAGCA
AAATACAGCACCCCTGCTACGTTGGAACAGAACTATATAATTTGTGAGCTGCACCAAAAAATAAGTGTGC
TGTTTTCCTTTTTGAGAAGCCACCTAAAGAAGAAGAGTATTGTGTTTTTCTCCAGTTGCAAAGAGGTTCA
GTATCTGTATAGGGTGTTCTGCAGGCTGCGCCCAGGGATCTCGATCCTTGCTCTCCATGGCCGGCAGCAG
CAGATGAGAAGAATGGAGGTCTACAATGAATTTGTCCGAAAGAGGGCCGCAGTACTTTTTGCCACTGATA
TTGCAGCTAGGGGACTGGATTTTCCAGCTGTGAATTGGGTCCTTCAGTTTGATTGTCCAGAGGATGCCAA
CACGTATATTCACAGAGCTGGTAGAACTGCCAGGTACAAAGAAGATGGAGAAGCGTTATTAATTTTACTA
CCTTCAGAAGAGCAAGGAATGGTGCAGCAGCTTCTCCAGAAGAAAGTACCTGTGAAGGAGATCAAAATCA
ATCCAGAAAAACTTATTGATGTTCAGAAAAAATTAGAATCATTTTTAGCTCAAGATCAAGATTTAAAAGA
AAGAGCTCAAAGGTGTTTTGTCTCCTATATACGCTCAGTATATCTTATGAAGGATAAAGAAGTATTTAAT
GTGAGCAAGTTACCTATTACTGAATATGCACTGTCTCTTGGTCTTGCTGTGGCACCGCGGATAAGATTTC
TTCAGAAACTGGAGAAGCAGCCCAGCACAGAATTGGTAAAGAATCCAGTCACAGAAGCAGTTCCGCCCAG
GGCCCCCTCCCTCCCCAACGATGAAGCAGACGAATCTCCAGCTTATGTCAGTGAGAAGATGTCCGTCCTT
CACAAAAGTGGGGAAAGACTGGAAGAGACAGAACACAGACTGGCTAGTGGTGACGGTGACGAAGAACAGG
ATGAAGAGACGGAAGACGAAGAGACGGAAGATCATCTGGGAAAAGCAAGAGAGCCTCACACTGAATCTGT
TGTCAGTATTGAGGAGGCACAGAAGGTCAAGGAAGTTTCTGTGCAGTTCTTAAACAGAGATGATGATGAT
GAAGATGGACCTGATGCTGACTTCCTCACAGTGAAGCGGCGGGATGTGTTTGGGTTGGATCTTAAAGAGA
ATGAAGCACTGTCGAAAAAAGAACCTTCTAAATCCAGTGTCAAGAAAAAATTAACCAAAGTTGCAGAAGC
AAAAAAAGTAATGAAAAGAAGTTTTAAAGTGAACAAGAAAATAACATTTACTGATGAAGGGGAGTTGGTT
CAGCAGTGGCCACAGATTCAGAAATGTGCTATAAAAGATGTGGAGGAAGAAGATGACACTGGTGGTATCA
ACCTAGACAAAGCAAAGGAAAGGCTTCAGGAAGAGGACAAATTTGACAAAGAAGAATACAGGAAGAAAAT
TAAGGCAAAGCACCGGGAAAGACGGCTAAAAGAAAGAGAGGCCAGAAGAGAAGCCAACAAAAGACAAGCA
AAGGCCAGAGATGAAGAGGAAGCCTTTCTGGACTGGAGTGATGAAGATGATGGTGGGTTTGATCCAAGTA
CACTTCCAGATCCTGACAAGCACAGAAGTTCTGAAGAGTCGGAGAGTGAAGATACAAACCATAAGATGAG
TGACACCAAGAAGAAGCAGGAAACAAGGAAGAGAAACAACACTGAAGACGATGATGTAAGACCAAGAAGT
CGTCATGGAAAGAAGGCCAAGTGGGAAACGGTAGAACCTTTGGATACAGGCCTGTCTTTAGCAGAGGATG
AAGAGCTGGTGTTACATCTCCTCAAAAGTCAAAACTAG

Translation (875 aa):
MGKTVASLGQGTRPDPVRSFNRWKKKHSHRQHQKKERRKQLKKPEWQVEREGISRLMQNYEKINVNEITR
FSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLEALYRLQWTSTD
GLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERINNINILVCTPGRLLQHMDETIC
FHATNLQMLVLDEADRILDMGFADTMNAIIENLPKKRQTLLFSATQTKSVKDLARLSLKDPEYVWVHEKA
KYSTPATLEQNYIICELHQKISVLFSFLRSHLKKKSIVFFSSCKEVQYLYRVFCRLRPGISILALHGRQQ
QMRRMEVYNEFVRKRAAVLFATDIAARGLDFPAVNWVLQFDCPEDANTYIHRAGRTARYKEDGEALLILL
PSEEQGMVQQLLQKKVPVKEIKINPEKLIDVQKKLESFLAQDQDLKERAQRCFVSYIRSVYLMKDKEVFN
VSKLPITEYALSLGLAVAPRIRFLQKLEKQPSTELVKNPVTEAVPPRAPSLPNDEADESPAYVSEKMSVL
HKSGERLEETEHRLASGDGDEEQDEETEDEETEDHLGKAREPHTESVVSIEEAQKVKEVSVQFLNRDDDD
EDGPDADFLTVKRRDVFGLDLKENEALSKKEPSKSSVKKKLTKVAEAKKVMKRSFKVNKKITFTDEGELV
QQWPQIQKCAIKDVEEEDDTGGINLDKAKERLQEEDKFDKEEYRKKIKAKHRERRLKEREARREANKRQA
KARDEEEAFLDWSDEDDGGFDPSTLPDPDKHRSSEESESEDTNHKMSDTKKKQETRKRNNTEDDDVRPRS
RHGKKAKWETVEPLDTGLSLAEDEELVLHLLKSQN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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