NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS40785.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
40785.1 Public Mus musculus 9 Epm2aip1 23 108 98 CCDS HistoryNCBI Gene:77781Re-query CCDS DB by CCDS ID:40785.1See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 40785.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000060711.7 ENSMUSP00000052904.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000060711.7Link to Ensembl Protein Viewer:ENSMUSP00000052904.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000060711Re-query CCDS DB by Protein ID:ENSMUSP00000052904
Original member Current member EBI ENSMUST00000135807.1 ENSMUSP00000120245.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000135807.1Link to Ensembl Protein Viewer:ENSMUSP00000120245.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000135807Re-query CCDS DB by Protein ID:ENSMUSP00000120245
Original member Current member NCBI NM_175266.4 NP_780475.1 Accepted alive Link to Nucleotide Sequence:NM_175266.4Link to Protein Sequence:NP_780475.1Re-query CCDS DB by Nucleotide ID:NM_175266Re-query CCDS DB by Protein ID:NP_780475Link to BLAST:NP_780475.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_780475.1 606 Q8VEH5 606 100% 0 0

Chromosomal Locations for CCDS 40785.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 111271961 111273781 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1821 nt):
ATGTGGATGACGCCCAAGAGGATTAGGATGGAAGTCGACGAGGCTCTGGTGTTCCGGCCCGAGTGGACCC
AGCGATACCTGGTGGTGGAGCCTGCGGAGGGTGACGGGGCCCTGTGCCTGGTGTGTCGCCGCCTGGTCGC
CTCTACTCGGGAACGCGACGTGAGGCGCCACTACGAGGCCGAGCACGAATTCTACGAGCGGTTTGTAGGG
GACGAGGAACGCGCGGCCCTGGTCGAGCGTCTGCGGCAGGGTGACATGTCTTTGGCCGCCGTGCTCACTC
CGGAGGAGAGAGCGACCCGGGCAGGCCTCGGCCTCTGCCGCTTCTTGGCCTTGAAGGGTCGCGGCTGGGG
TGAGGGTGACTTCGTACACCAGTGCATGGAGGTGTTGCTGAGAGAGGTGCTGCCGGATCACGTCGGCGTC
CTGGAAGGCATTGACTTGTCTCCAGAGATCACACGGCAGAGGATTCTGAGCATTGACAGCAACCTCCGCA
GCCAGCTGTTTAACCGAGCCAGGGACTTTAAGGCCTATTCCCTTGCTTTGGATGACCAGGCTTTTGTGGC
CTATGAGAACTACCTGCTGGTCTTCATCCGTGGCGTCGGCCGCGACCTGGAGGTGCAAGAAGATCTTCTG
ACGATTATCAACCTGACTCATCACTTCAGTGTTGGGGCTCTCATGTCGGCAATTCTGGAAGCCCTGCAGA
CAGCAGGGCTCAGCTTACAGCGAATGGTTGGACTGACCACGACCCACACTTTAAGGATGATCGGCGAGAA
CTCCGGACTGGTCTCCTACATGAGAGAGAAGGCCGTGAGTCCCAACTGTTGGAACGTAATCCACTATTCG
GGATTTCTTCACTTGGAACTGTTGAGTTCTTATGATGTTGATATTAATCAGATCATAAATACCATATCTG
AATGGGTAGTTATGATTAAGACCAGAGGTGTTAGGCGACCGGAGTTTCAGCCTCTACTAACTGAGTCTGA
GTCAGAGCATGGTGAAAGAGTTAACGGACGGTGTTTGAACAACTGGCTGAGAAGAGGCAAAACGTTAAAA
CTAATATTTTCACTAAGAAAAGAAATCGAGGCGTTCTTGGTCTCAGTGGGGGCAACAACAGTTCATTTCT
CAGACAAGCAGTGGCTTTGTGATTTTGGTTTCTTGGTAGATATTATGGACTATCTTCGAGAGATCAGTGA
AGAACTGCAGATCAGTAAAGTCTTTGCTGCTGCTGCCTTTGAACGCATCTGCACCTTTGAGGGTAAGCTG
AGTTCACTTCAGAGACATATGGAGGAAGTAAATCTAACAGACTTTCCTGCCTTCAGTATAATCGTTGATG
AACTTAAACAGCAGTTTAAGGAAGATCAAAAAATATTTGATCCTGACAGGTATCAAATGGTGATCTCCCG
CCTACAGAAAGATTTTGAGAGACATTTTAAGGACCTCAGGTTCATTAAAAAGGACTTAGAACTTTTCTCA
AATCCATTTAGCTTTAAACCGGAATATGCGCCTATTTCTGTAAGAGTGGAGCTAACAAAACTTCAGGCCA
ACACTGACCTGTGGAATGAGTACAGAGTCAAAGACTTGGGACAGTTTTATGCAGGACTGTCTGGTGAAGC
TTACCCAATTATCAAAGGGGTTGCCTATAAGGTGGCATCCTTATTTGATAGTAACCAGATCTGTGATAAG
GCTTTTGCATATTTAACTCGAAACCAGCACACATTGAGCCAGCCACTGACGGATGAGCATCTCCAAGCAC
TGTTTCGAGTTGCCACAACTGAAATGGATCCTCGTTGGGATGATCTTGTGAGAGAAAGAAATGATTCGTA
A

Translation (606 aa):
MWMTPKRIRMEVDEALVFRPEWTQRYLVVEPAEGDGALCLVCRRLVASTRERDVRRHYEAEHEFYERFVG
DEERAALVERLRQGDMSLAAVLTPEERATRAGLGLCRFLALKGRGWGEGDFVHQCMEVLLREVLPDHVGV
LEGIDLSPEITRQRILSIDSNLRSQLFNRARDFKAYSLALDDQAFVAYENYLLVFIRGVGRDLEVQEDLL
TIINLTHHFSVGALMSAILEALQTAGLSLQRMVGLTTTHTLRMIGENSGLVSYMREKAVSPNCWNVIHYS
GFLHLELLSSYDVDINQIINTISEWVVMIKTRGVRRPEFQPLLTESESEHGERVNGRCLNNWLRRGKTLK
LIFSLRKEIEAFLVSVGATTVHFSDKQWLCDFGFLVDIMDYLREISEELQISKVFAAAAFERICTFEGKL
SSLQRHMEEVNLTDFPAFSIIVDELKQQFKEDQKIFDPDRYQMVISRLQKDFERHFKDLRFIKKDLELFS
NPFSFKPEYAPISVRVELTKLQANTDLWNEYRVKDLGQFYAGLSGEAYPIIKGVAYKVASLFDSNQICDK
AFAYLTRNQHTLSQPLTDEHLQALFRVATTEMDPRWDDLVRERNDS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH