NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS1530.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
1530.2 Public Homo sapiens 1 HHIPL2 24 110 108 CCDS HistoryNCBI Gene:79802Re-query CCDS DB by CCDS ID:1530.2See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 1530.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000343410.7 ENSP00000342118.6 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000343410.7Link to Ensembl Protein Viewer:ENSP00000342118.6Re-query CCDS DB by Nucleotide ID:ENST00000343410Re-query CCDS DB by Protein ID:ENSP00000342118
Original member Current member NCBI NM_024746.4 NP_079022.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_024746.4Link to Protein Sequence:NP_079022.2Re-query CCDS DB by Nucleotide ID:NM_024746Re-query CCDS DB by Protein ID:NP_079022Link to BLAST:NP_079022.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_079022.2 724 Q6UWX4 724 100% 0 0

Chromosomal Locations for CCDS 1530.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 222522601 222522887 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 222523612 222523694 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 222526969 222527050 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 222531966 222532111 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 222538648 222538774 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 222540010 222540341 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 222542012 222542155 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 222543537 222544189 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 222547724 222548044 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2175 nt):
ATGCTGAGAACGTCCACTCCTAATCTGTGTGGTGGTCTGCATTGCCGGGCCCCCTGGCTCTCTTCTGGCA
TTCTCTGCCTCTGCCTCATATTCTTGTTGGGCCAGGTGGGCTTGCTGCAGGGACACCCCCAGTGCCTGGA
TTACGGGCCCCCTTTCCAGCCCCCTCTGCACCTTGAGTTTTGCTCTGACTATGAGTCCTTCGGCTGCTGT
GATCAGCACAAGGACCGCCGCATCGCTGCCCGGTACTGGGACATCATGGAATATTTTGATCTGAAGAGAC
ATGAGCTGTGTGGAGATTACATTAAAGACATCCTTTGCCAGGAGTGCTCGCCCTACGCAGCCCACCTCTA
CGACGCCGAAAACACCCAGACGCCTCTCCGGAATCTCCCGGGCCTCTGCTCTGATTACTGCTCTGCCTTC
CATTCTAACTGTCACTCAGCCATTTCCCTGCTGACCAATGACCGCGGCCTCCAGGAGTCTCATGGAAGGG
ACGGTACCCGCTTCTGCCACCTCCTGGACCTTCCTGACAAGGACTATTGCTTCCCTAATGTCCTGAGGAA
CGACTATCTCAACCGCCACCTGGGCATGGTGGCCCAAGATCCTCAGGGCTGCCTGCAGCTCTGCCTGAGC
GAGGTGGCCAACGGGCTGAGGAACCCCGTCTCCATGGTCCATGCTGGGGACGGCACCCATCGCTTCTTTG
TTGCCGAGCAGGTAGGAGTGGTGTGGGTCTACCTCCCTGATGGGAGTCGCCTGGAGCAACCCTTCCTGGA
CCTCAAGAACATCGTGTTGACCACCCCATGGATCGGGGATGAGAGAGGCTTCTTGGGGTTGGCTTTTCAC
CCCAAATTCCGCCACAATCGCAAGTTCTATATTTATTATTCGTGCCTGGACAAGAAGAAGGTAGAAAAGA
TCCGAATTAGTGAGATGAAGGTTTCTCGGGCTGATCCTAACAAAGCTGACCTGAAATCAGAGAGGGTCAT
CTTGGAGATTGAAGAACCAGCCTCAAACCATAATGGCGGACAACTTCTTTTTGGCCTGGATGGCTATATG
TACATATTCACTGGGGACGGGGGACAGGCTGGAGATCCCTTTGGCCTGTTTGGAAATGCTCAGAACAAAA
GTTCCCTGCTGGGAAAAGTTTTAAGGATCGATGTGAACAGGGCAGGCTCACATGGCAAGCGGTACCGAGT
CCCCTCGGACAATCCATTTGTTTCTGAGCCAGGGGCCCACCCCGCCATCTATGCCTATGGGATCAGGAAC
ATGTGGCGTTGTGCTGTGGACCGAGGGGACCCCATCACGCGCCAGGGCCGAGGCCGGATATTCTGTGGGG
ACGTGGGCCAGAACAGGTTTGAAGAGGTTGACCTCATTTTGAAAGGTGGAAACTATGGCTGGAGAGCAAA
GGAAGGGTTTGCATGTTATGACAAAAAACTTTGTCACAATGCCTCTTTGGATGATGTTCTGCCAATCTAT
GCTTATGGCCATGCAGTGGGGAAGTCAGTCACTGGAGGTTATGTCTATCGTGGTTGTGAATCCCCAAATC
TCAATGGCCTGTATATCTTTGGAGACTTCATGAGTGGTCGACTTATGGCTTTGCAGGAAGATAGAAAAAA
CAAGAAATGGAAGAAGCAGGATCTTTGCCTGGGCAGCACCACGTCCTGTGCCTTCCCAGGGCTGATCAGC
ACCCATAGCAAGTTCATCATCTCCTTTGCTGAAGATGAAGCAGGGGAGCTGTATTTCCTGGCGACCTCTT
ACCCAAGTGCCTATGCACCACGTGGATCTATTTACAAGTTTGTTGACCCCTCAAGGCGAGCACCCCCAGG
CAAGTGCAAATACAAGCCAGTGCCCGTGAGAACCAAGAGTAAGCGGATCCCGTTCAGACCACTCGCCAAG
ACAGTCTTGGACTTGCTAAAGGAACAATCAGAGAAAGCTGCTAGAAAATCTTCCAGTGCAACCTTAGCTT
CTGGCCCAGCCCAGGGTTTGTCTGAGAAAGGCTCCTCCAAGAAGCTGGCTTCTCCTACAAGCAGCAAGAA
TACATTGCGAGGGCCTGGTACAAAGAAGAAAGCCAGAGTGGGGCCCCACGTCCGCCAGGGCAAGAGGAGG
AAGAGCCTGAAAAGCCACAGTGGCAGGATGAGGCCATCAGCAGAGCAGAAGCGAGCTGGCAGAAGTCTCC
CTTGA

Translation (724 aa):
MLRTSTPNLCGGLHCRAPWLSSGILCLCLIFLLGQVGLLQGHPQCLDYGPPFQPPLHLEFCSDYESFGCC
DQHKDRRIAARYWDIMEYFDLKRHELCGDYIKDILCQECSPYAAHLYDAENTQTPLRNLPGLCSDYCSAF
HSNCHSAISLLTNDRGLQESHGRDGTRFCHLLDLPDKDYCFPNVLRNDYLNRHLGMVAQDPQGCLQLCLS
EVANGLRNPVSMVHAGDGTHRFFVAEQVGVVWVYLPDGSRLEQPFLDLKNIVLTTPWIGDERGFLGLAFH
PKFRHNRKFYIYYSCLDKKKVEKIRISEMKVSRADPNKADLKSERVILEIEEPASNHNGGQLLFGLDGYM
YIFTGDGGQAGDPFGLFGNAQNKSSLLGKVLRIDVNRAGSHGKRYRVPSDNPFVSEPGAHPAIYAYGIRN
MWRCAVDRGDPITRQGRGRIFCGDVGQNRFEEVDLILKGGNYGWRAKEGFACYDKKLCHNASLDDVLPIY
AYGHAVGKSVTGGYVYRGCESPNLNGLYIFGDFMSGRLMALQEDRKNKKWKKQDLCLGSTTSCAFPGLIS
THSKFIISFAEDEAGELYFLATSYPSAYAPRGSIYKFVDPSRRAPPGKCKYKPVPVRTKSKRIPFRPLAK
TVLDLLKEQSEKAARKSSSATLASGPAQGLSEKGSSKKLASPTSSKNTLRGPGTKKKARVGPHVRQGKRR
KSLKSHSGRMRPSAEQKRAGRSLP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH