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Report for CCDS3396.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
3396.1 Public Homo sapiens 4 GRPEL1 24 110 108 CCDS HistoryNCBI Gene:80273Re-query CCDS DB by CCDS ID:3396.1See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 3396.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000264954.5 ENSP00000264954.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000264954.5Link to Ensembl Protein Viewer:ENSP00000264954.4Re-query CCDS DB by Nucleotide ID:ENST00000264954Re-query CCDS DB by Protein ID:ENSP00000264954
Original member Current member NCBI NM_025196.4 NP_079472.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_025196.4Link to Protein Sequence:NP_079472.1Re-query CCDS DB by Nucleotide ID:NM_025196Re-query CCDS DB by Protein ID:NP_079472Link to BLAST:NP_079472.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_079472.1 217 Q9HAV7 217 100% 0 0

Chromosomal Locations for CCDS 3396.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 7060862 7061208 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 7062385 7062466 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 7064061 7064223 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 7067971 7068032 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (654 nt):
ATGGCGGCTCAGTGCGTGAGGTTGGCGCGGCGCAGTCTTCCTGCTTTGGCGTTGTCTCTCAGGCCATCTC
CCCGGTTGTTGTGCACAGCCACGAAACAAAAGAACAGTGGCCAGAACCTGGAAGAGGACATGGGTCAGAG
TGAACAGAAGGCAGATCCTCCTGCTACAGAGAAGACCCTCCTGGAAGAGAAGGTCAAGTTGGAGGAACAG
CTGAAGGAGACTGTGGAAAAATATAAACGAGCTTTGGCAGACACTGAGAACTTACGGCAGAGGAGCCAGA
AATTGGTGGAGGAGGCAAAATTATACGGCATTCAAGCCTTCTGCAAGGACTTGTTGGAGGTGGCAGACGT
TCTGGAGAAGGCAACACAGTGTGTTCCAAAAGAAGAAATTAAAGACGATAACCCTCACCTGAAGAACCTC
TATGAGGGGCTGGTCATGACTGAAGTCCAGATCCAGAAGGTGTTCACAAAGCATGGCTTGCTCAAGTTGA
ACCCTGTCGGAGCCAAGTTCGACCCTTATGAACATGAGGCCTTGTTCCACACACCGGTTGAGGGGAAGGA
GCCAGGCACAGTGGCCCTAGTTAGCAAAGTGGGGTACAAGCTGCATGGGCGCACTCTGAGACCCGCCCTG
GTGGGGGTGGTGAAGGAAGCTTAG

Translation (217 aa):
MAAQCVRLARRSLPALALSLRPSPRLLCTATKQKNSGQNLEEDMGQSEQKADPPATEKTLLEEKVKLEEQ
LKETVEKYKRALADTENLRQRSQKLVEEAKLYGIQAFCKDLLEVADVLEKATQCVPKEEIKDDNPHLKNL
YEGLVMTEVQIQKVFTKHGLLKLNPVGAKFDPYEHEALFHTPVEGKEPGTVALVSKVGYKLHGRTLRPAL
VGVVKEA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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