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Report for CCDS22934.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22934.1 Public Mus musculus 9 Herpud2 23 108 98 CCDS HistoryNCBI Gene:80517Re-query CCDS DB by CCDS ID:22934.1See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 22934.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000008573.8 ENSMUSP00000008573.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000008573.8Link to Ensembl Protein Viewer:ENSMUSP00000008573.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000008573Re-query CCDS DB by Protein ID:ENSMUSP00000008573
Original member Current member NCBI NM_020586.2 NP_065611.1 Accepted alive Link to Nucleotide Sequence:NM_020586.2Link to Protein Sequence:NP_065611.1Re-query CCDS DB by Nucleotide ID:NM_020586Re-query CCDS DB by Protein ID:NP_065611Link to BLAST:NP_065611.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_065611.1 404 Q9JJC9 404 100% 0 0

Chromosomal Locations for CCDS 22934.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 25108844 25109005 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 25109440 25109554 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 25110411 25110734 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 25113821 25113943 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 25124872 25125023 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 25130536 25130649 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 25133195 25133272 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 25150820 25150966 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1215 nt):
ATGGACCAAAGTGGGATGGAGATTCCTGTGACTCTCATCATTAAAGCACCGAATCAGAAATACAGTGACC
AGACTATTAGCTGCTTCTTGAACTGGACCGTGGGGAAACTAAAAACGCATCTATCTAACGTGTACCCTAG
CAAACCATTGACAAAGGACCAGAGGTTGGTGTATTCTGGCAGACTGCTTCCTGACCATCTGCAGCTGAAA
GACATCCTCAGAAAACAAGATGAGTATCATATGGTTCATCTAGTCTGTGCTTCTCGGAGTCCTCCCAGTT
CTCCAAAATCCAGCACCGATAGAGGAAGTCACGAAGCACTGGCATCCAGCACCAGCTCTAATTCAGACCA
TTCGGATTCAACAACTCCATCACCCAGTCAGGAGAGTTTGTCATTAGTTACTGGTTCTTCAGAAGGATTG
AGACAACGTACCCTTTCACAAGCACAGACTGACCCAGCCCAGAGTCATCAGTTTCCATATGTAATCCAAG
GAAATGTGGATCACCAGTTTCCTGGGCAAGGTGTGCCCCCTGCGTTCCCAGTGTACCCTGCGCTCAGCCC
ACTGCAGATGCTGTGGTGGCAGCAGATGTACGCTCATCAGTATTATATGCAATATCAAGCTGCAGTTTCA
GCTCAGGCCACATCAAGTGCCGGCTCAGCCCAGCGTGCTGCATCATCACCTCTAAATTTGGCACATGTTC
CTGGAGAAGAGCCTCCACCAGCTCCCAACCTAGTGGCCCAAGAAAATGGGCCCATGAATGAGAATGTTCA
AATGAATGCACAGGGCGGCCCAGTGCTGAATGAAGAAGACTTGAACCGCGACTGGCTGGACTGGGTGTAC
ACGTTCTCCCGAGCTGCCGTCCTCCTCAGCATCGTATACTTCTATTCTTCTTTCAGTCGGTTTATCATGG
TAATGGGAGCCATGCTGCTGGTTTATTTACACCAAGCTGGATGGTTTCCGTTCAGGCAAGAAGGCGGTCA
GCAACAAGCTCCCAACAATGTGGACGCTAACAATGACGGGCATAATGCAAACAATCTAGAACTTGAAGAA
ATGGAGCGCCTTATGGATGATGGACTTGAAGATGAGAGTGGAGAAGATGCAGGTGAAGATGCCAGTGCAG
CTCAAAGGCCTGGGTTAATGGCTTCAGCTTGGTCTTTTATCACCACCTTTTTTACTTCACTAATACCAGA
GGGGCCTCCCCAAGTTGCCAATTAG

Translation (404 aa):
MDQSGMEIPVTLIIKAPNQKYSDQTISCFLNWTVGKLKTHLSNVYPSKPLTKDQRLVYSGRLLPDHLQLK
DILRKQDEYHMVHLVCASRSPPSSPKSSTDRGSHEALASSTSSNSDHSDSTTPSPSQESLSLVTGSSEGL
RQRTLSQAQTDPAQSHQFPYVIQGNVDHQFPGQGVPPAFPVYPALSPLQMLWWQQMYAHQYYMQYQAAVS
AQATSSAGSAQRAASSPLNLAHVPGEEPPPAPNLVAQENGPMNENVQMNAQGGPVLNEEDLNRDWLDWVY
TFSRAAVLLSIVYFYSSFSRFIMVMGAMLLVYLHQAGWFPFRQEGGQQQAPNNVDANNDGHNANNLELEE
MERLMDDGLEDESGEDAGEDASAAQRPGLMASAWSFITTFFTSLIPEGPPQVAN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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