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Report for CCDS3862.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
3862.1 Public Homo sapiens 5 CLPTM1L 24 110 108 CCDS HistoryNCBI Gene:81037Re-query CCDS DB by CCDS ID:3862.1See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 3862.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000320895.10 ENSP00000313854.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000320895.10Link to Ensembl Protein Viewer:ENSP00000313854.5Re-query CCDS DB by Nucleotide ID:ENST00000320895Re-query CCDS DB by Protein ID:ENSP00000313854
Original member Current member NCBI NM_030782.5 NP_110409.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_030782.5Link to Protein Sequence:NP_110409.2Re-query CCDS DB by Nucleotide ID:NM_030782Re-query CCDS DB by Protein ID:NP_110409Link to BLAST:NP_110409.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_110409.2 538 Q96KA5-1 538 100% 0 0

Chromosomal Locations for CCDS 3862.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 1318369 1318453 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 1320616 1320731 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 1321635 1321679 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 1321764 1321819 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 1322877 1322911 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 1323787 1323869 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 1324763 1324813 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 1325751 1325816 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 1330280 1330383 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 1331799 1331883 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 1334289 1334383 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 1335057 1335174 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 1337904 1337982 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 1338860 1339005 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 1341671 1341860 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 1344351 1344451 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 1344680 1344841 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1617 nt):
ATGTGGAGCGGCCGCAGCTCCTTCACCAGCTTGGTGGTGGGCGTGTTCGTGGTCTACGTGGTGCACACCT
GCTGGGTCATGTACGGCATCGTCTACACCCGCCCGTGCTCCGGCGACGCCAACTGCATCCAGCCCTACCT
GGCGCGGCGGCCCAAGCTGCAGCTGAGCGTGTACACCACGACGAGGTCCCACCTGGGTGCTGAGAACAAC
ATCGACCTGGTCTTGAATGTGGAAGACTTTGATGTGGAGTCCAAATTTGAAAGGACAGTTAATGTTTCTG
TACCAAAGAAAACGAGAAACAATGGGACGCTGTATGCCTACATCTTCCTCCATCACGCTGGGGTCCTGCC
GTGGCACGACGGGAAGCAGGTGCACCTGGTCAGTCCTCTGACCACCTACATGGTCCCCAAGCCAGAAGAA
ATCAACCTGCTCACCGGGGAGTCTGATACACAGCAGATCGAGGCGGAGAAGAAGCCGACGAGTGCCCTGG
ATGAGCCAGTGTCCCACTGGCGACCGCGGCTGGCGCTGAACGTGATGGCGGACAACTTTGTCTTTGACGG
GTCCTCCCTGCCTGCCGATGTGCATCGGTACATGAAGATGATCCAGCTGGGGAAAACCGTGCATTACCTG
CCCATCCTGTTCATCGACCAGCTCAGCAACCGCGTGAAGGACCTGATGGTCATAAACCGCTCCACCACCG
AGCTGCCCCTCACCGTGTCCTACGACAAGGTCTCACTGGGGCGGCTGCGCTTCTGGATCCACATGCAGGA
CGCCGTGTACTCCCTGCAGCAGTTCGGGTTTTCAGAGAAAGATGCTGATGAGGTGAAAGGAATTTTTGTA
GATACCAACTTATACTTCCTGGCGCTGACCTTCTTTGTCGCAGCGTTCCATCTTCTCTTTGATTTCCTGG
CCTTTAAAAATGACATCAGTTTCTGGAAGAAGAAGAAGAGCATGATCGGCATGTCCACCAAGGCAGTGCT
CTGGCGCTGCTTCAGCACCGTGGTCATCTTTCTGTTCCTGCTGGACGAGCAGACGAGCCTGCTGGTGCTG
GTCCCGGCGGGTGTTGGAGCCGCCATTGAGCTGTGGAAAGTGAAGAAGGCATTGAAGATGACTATTTTTT
GGAGAGGCCTGATGCCCGAATTTCAGTTTGGCACTTACAGCGAATCTGAGAGGAAAACCGAGGAGTACGA
TACTCAGGCCATGAAGTACTTGTCATACCTGCTGTACCCTCTCTGTGTCGGGGGTGCTGTCTATTCACTC
CTGAATATCAAATATAAGAGCTGGTACTCCTGGTTAATCAACAGCTTCGTCAACGGGGTCTATGCCTTTG
GTTTCCTCTTCATGCTGCCCCAGCTCTTTGTGAACTACAAGTTGAAGTCAGTGGCACATCTGCCCTGGAA
GGCCTTCACCTACAAGGCTTTCAACACCTTCATTGATGACGTCTTTGCCTTCATCATCACCATGCCCACG
TCTCACCGGCTGGCCTGCTTCCGGGACGACGTGGTGTTTCTGGTCTACCTGTACCAGCGGTGGCTTTATC
CTGTGGATAAACGCAGAGTGAACGAGTTTGGGGAGTCCTACGAGGAGAAGGCCACGCGGGCGCCCCACAC
GGACTGA

Translation (538 aa):
MWSGRSSFTSLVVGVFVVYVVHTCWVMYGIVYTRPCSGDANCIQPYLARRPKLQLSVYTTTRSHLGAENN
IDLVLNVEDFDVESKFERTVNVSVPKKTRNNGTLYAYIFLHHAGVLPWHDGKQVHLVSPLTTYMVPKPEE
INLLTGESDTQQIEAEKKPTSALDEPVSHWRPRLALNVMADNFVFDGSSLPADVHRYMKMIQLGKTVHYL
PILFIDQLSNRVKDLMVINRSTTELPLTVSYDKVSLGRLRFWIHMQDAVYSLQQFGFSEKDADEVKGIFV
DTNLYFLALTFFVAAFHLLFDFLAFKNDISFWKKKKSMIGMSTKAVLWRCFSTVVIFLFLLDEQTSLLVL
VPAGVGAAIELWKVKKALKMTIFWRGLMPEFQFGTYSESERKTEEYDTQAMKYLSYLLYPLCVGGAVYSL
LNIKYKSWYSWLINSFVNGVYAFGFLFMLPQLFVNYKLKSVAHLPWKAFTYKAFNTFIDDVFAFIITMPT
SHRLACFRDDVVFLVYLYQRWLYPVDKRRVNEFGESYEEKATRAPHTD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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