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Report for CCDS12296.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
12296.1 Public Homo sapiens 19 YJU2B 24 110 108 CCDS HistoryNCBI Gene:81576Re-query CCDS DB by CCDS ID:12296.1See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 12296.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000221554.13 ENSP00000221554.7 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000221554.13Link to Ensembl Protein Viewer:ENSP00000221554.7Re-query CCDS DB by Nucleotide ID:ENST00000221554Re-query CCDS DB by Protein ID:ENSP00000221554
Original member Current member EBI ENST00000586600.5 ENSP00000465776.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000586600.5Link to Ensembl Protein Viewer:ENSP00000465776.1Re-query CCDS DB by Nucleotide ID:ENST00000586600Re-query CCDS DB by Protein ID:ENSP00000465776
Original member Current member NCBI NM_001320561.2 NP_001307490.1 Accepted alive Link to Nucleotide Sequence:NM_001320561.2Link to Protein Sequence:NP_001307490.1Re-query CCDS DB by Nucleotide ID:NM_001320561Re-query CCDS DB by Protein ID:NP_001307490Link to BLAST:NP_001307490.1
Original member Current member NCBI NM_001320564.2 NP_001307493.1 Accepted alive Link to Nucleotide Sequence:NM_001320564.2Link to Protein Sequence:NP_001307493.1Re-query CCDS DB by Nucleotide ID:NM_001320564Re-query CCDS DB by Protein ID:NP_001307493Link to BLAST:NP_001307493.1
Original member Current member NCBI NM_001320565.2 NP_001307494.1 Accepted alive Link to Nucleotide Sequence:NM_001320565.2Link to Protein Sequence:NP_001307494.1Re-query CCDS DB by Nucleotide ID:NM_001320565Re-query CCDS DB by Protein ID:NP_001307494Link to BLAST:NP_001307494.1
Original member Current member NCBI NM_030818.4 NP_110445.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_030818.4Link to Protein Sequence:NP_110445.1Re-query CCDS DB by Nucleotide ID:NM_030818Re-query CCDS DB by Protein ID:NP_110445Link to BLAST:NP_110445.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001307490.1 396 P13994 396 100% 0 0
NP_001307493.1 396 P13994 396 100% 0 0
NP_001307494.1 396 P13994 396 100% 0 0
NP_110445.1 396 P13994 396 100% 0 0

Chromosomal Locations for CCDS 12296.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 13751809 13751811 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 13754289 13754342 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 13756197 13756279 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 13757418 13757473 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 13757786 13757846 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 13758868 13759010 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 13759100 13759272 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 13762299 13762437 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 13762590 13763068 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1191 nt):
ATGGGTGAAAGGAAAGGGGTCAACAAGTACTATCCTCCAGACTTCAACCCTGAGAAGCATGGCTCTCTCA
ACCGATACCACAACAGCCACCCGCTTCGGGAGCGGGCTCGGAAGCTGTCACAGGGCATCCTCATCATCCG
ATTCGAAATGCCATATAACATCTGGTGCGATGGCTGCAAGAACCACATCGGCATGGGTGTTCGTTACAAT
GCAGAAAAGAAGAAGGTGGGCAATTACTACACAACCCCGATCTACAGGTTCCGGATGAAATGCCACCTCT
GTGTCAACTACATCGAGATGCAGACGGACCCCGCCAACTGCGACTACGTGATCGTGAGTGGCGCCCAGCG
CAAGGAGGAGCGCTGGGACATGGCGGACAATGAGCAGGTGCTGACCACAGAGCATGAGAAGAAGCAGAAG
CTGGAGACGGACGCCATGTTCCGGCTGGAGCATGGCGAGGCCGACCGCAGCACACTCAAGAAGGCGCTGC
CCACACTGAGCCACATCCAGGAGGCCCAGAGCGCCTGGAAGGACGACTTCGCCCTCAACAGCATGCTGCG
GAGAAGGTTCCGGGAAAAGAAAAAAGCCATCCAGGAGGAGGAGGAGAGAGACCAGGCCTTGCAGGCCAAG
GCGAGCCTGACCATCCCGCTGGTGCCCGAGACGGAAGATGACCGCAAGCTGGCGGCTCTGCTGAAGTTCC
ACACCCTGGACTCCTACGAGGACAAGCAGAAACTCAAGCGGACCGAGATCATCAGCCGCTCCTGGTTCCC
CTCTGCCCCCGGATCCGCCTCCAGCAGCAAGGTCAGCGGCGTCCTGAAGAAGCTGGCACAGAGCCGCAGA
ACCGCGCTTGCCACCTCCCCCATCACCGTCGGGGACCTGGGCATCGTGCGGCGGAGGTCTCGGGACGTCC
CGGAGAGCCCCCAGCATGCGGCCGACACCCCCAAGTCTGGGGAACCGCGGGTACCAGAGGAGGCTGCCCA
GGACCGGCCCATGTCCCCCGGAGACTGTCCTCCGGAAACAACTGAGACCCCCAAGTGCAGCAGCCCGAGG
GGGCAGGAAGGGAGCCGTCAGGACAAGCCCCTGTCGCCAGCAGGCTCCTCCCAGGAGGCAGCTGACACCC
CCGACACGCGGCACCCCTGCAGTCTCGGCTCCTCCCTCGTGGCGGACTACTCCGACTCGGAGAGTGAGTG
A

Translation (396 aa):
MGERKGVNKYYPPDFNPEKHGSLNRYHNSHPLRERARKLSQGILIIRFEMPYNIWCDGCKNHIGMGVRYN
AEKKKVGNYYTTPIYRFRMKCHLCVNYIEMQTDPANCDYVIVSGAQRKEERWDMADNEQVLTTEHEKKQK
LETDAMFRLEHGEADRSTLKKALPTLSHIQEAQSAWKDDFALNSMLRRRFREKKKAIQEEEERDQALQAK
ASLTIPLVPETEDDRKLAALLKFHTLDSYEDKQKLKRTEIISRSWFPSAPGSASSSKVSGVLKKLAQSRR
TALATSPITVGDLGIVRRRSRDVPESPQHAADTPKSGEPRVPEEAAQDRPMSPGDCPPETTETPKCSSPR
GQEGSRQDKPLSPAGSSQEAADTPDTRHPCSLGSSLVADYSDSESE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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