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Report for CCDS26060.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26060.1 Public Mus musculus 12 Jdp2 23 108 98 CCDS HistoryNCBI Gene:81703Re-query CCDS DB by CCDS ID:26060.1See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 26060.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000050687.13 ENSMUSP00000059724.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000050687.13Link to Ensembl Protein Viewer:ENSMUSP00000059724.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000050687Re-query CCDS DB by Protein ID:ENSMUSP00000059724
Original member Current member EBI ENSMUST00000171754.2 ENSMUSP00000129985.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000171754.2Link to Ensembl Protein Viewer:ENSMUSP00000129985.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000171754Re-query CCDS DB by Protein ID:ENSMUSP00000129985
Original member Current member EBI ENSMUST00000177587.8 ENSMUSP00000136823.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000177587.8Link to Ensembl Protein Viewer:ENSMUSP00000136823.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000177587Re-query CCDS DB by Protein ID:ENSMUSP00000136823
Original member NCBI NM_001205052.1 NP_001191981.1 Updated not alive Link to Nucleotide Sequence:NM_001205052.1Link to Protein Sequence:NP_001191981.1Re-query CCDS DB by Nucleotide ID:NM_001205052Re-query CCDS DB by Protein ID:NP_001191981
Current member NCBI NM_001205052.2 NP_001191981.1 Accepted alive Link to Nucleotide Sequence:NM_001205052.2Link to Protein Sequence:NP_001191981.1Re-query CCDS DB by Nucleotide ID:NM_001205052Re-query CCDS DB by Protein ID:NP_001191981Link to BLAST:NP_001191981.1
Original member NCBI NM_001205053.1 NP_001191982.1 Updated not alive Link to Nucleotide Sequence:NM_001205053.1Link to Protein Sequence:NP_001191982.1Re-query CCDS DB by Nucleotide ID:NM_001205053Re-query CCDS DB by Protein ID:NP_001191982
Current member NCBI NM_001205053.2 NP_001191982.1 Accepted alive Link to Nucleotide Sequence:NM_001205053.2Link to Protein Sequence:NP_001191982.1Re-query CCDS DB by Nucleotide ID:NM_001205053Re-query CCDS DB by Protein ID:NP_001191982Link to BLAST:NP_001191982.1
Original member NCBI NM_030887.2 NP_112149.2 Updated not alive Link to Nucleotide Sequence:NM_030887.2Link to Protein Sequence:NP_112149.2Re-query CCDS DB by Nucleotide ID:NM_030887Re-query CCDS DB by Protein ID:NP_112149
Current member NCBI NM_030887.3 NP_112149.2 Accepted alive Link to Nucleotide Sequence:NM_030887.3Link to Protein Sequence:NP_112149.2Re-query CCDS DB by Nucleotide ID:NM_030887Re-query CCDS DB by Protein ID:NP_112149Link to BLAST:NP_112149.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001191981.1 163 P97875 163 100% 0 0
NP_001191982.1 163 P97875 163 100% 0 0
NP_112149.2 163 P97875 163 100% 0 0

Chromosomal Locations for CCDS 26060.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 85608165 85608365 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 85631645 85631749 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 85638773 85638958 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (492 nt):
ATGATGCCTGGGCAGATCCCAGACCCTTCAGTGACCGCAGGCTCTCTGCCAGGGCTCGGCCCCCTCACCG
GACTTCCCAGCTCTGCTCTGACCACAGAGGAGCTGAAATACGCTGACATCCGCAACATTGGGGCGATGAT
TGCGCCCTTGCACTTCCTGGAGGTGAAACTGGGCAAGAGGCCCCAACCCGTGAAGAGTGAGCTAGACGAG
GAAGAAGAGCGAAGGAAAAGGCGCCGGGAAAAGAACAAAGTCGCTGCAGCCAGATGCCGGAACAAGAAGA
AGGAACGCACAGAGTTTCTGCAGAGGGAGTCAGAGCGGCTGGAGCTCATGAACGCAGAGCTGAAGACGCA
GATAGAGGAGCTGAAGCTGGAGCGGCAACAGCTTATCCTGATGCTCAACCGCCACCGCCCCACCTGCATC
GTGCGCACAGATAGCGTCAGGACGCCCGAGTCCGAAGGCAACCCACTGCTGGAGCAGCTGGACAAGAAGT
GA

Translation (163 aa):
MMPGQIPDPSVTAGSLPGLGPLTGLPSSALTTEELKYADIRNIGAMIAPLHFLEVKLGKRPQPVKSELDE
EEERRKRRREKNKVAAARCRNKKKERTEFLQRESERLELMNAELKTQIEELKLERQQLILMLNRHRPTCI
VRTDSVRTPESEGNPLLEQLDKK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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