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Report for CCDS11009.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
11009.1 Public Homo sapiens 17 RILP 24 110 108 CCDS HistoryNCBI Gene:83547Re-query CCDS DB by CCDS ID:11009.1See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 11009.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000301336.7 ENSP00000301336.6 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000301336.7Link to Ensembl Protein Viewer:ENSP00000301336.6Re-query CCDS DB by Nucleotide ID:ENST00000301336Re-query CCDS DB by Protein ID:ENSP00000301336
Original member Current member NCBI NM_031430.3 NP_113618.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_031430.3Link to Protein Sequence:NP_113618.2Re-query CCDS DB by Nucleotide ID:NM_031430Re-query CCDS DB by Protein ID:NP_113618Link to BLAST:NP_113618.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_113618.2 401 Q96NA2-1 401 100% 0 0

Chromosomal Locations for CCDS 11009.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 1646442 1646619 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 1646906 1646989 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 1647835 1647957 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 1648350 1648495 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 1648799 1649044 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 1649200 1649306 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 1649412 1649505 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 1649577 1649804 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1206 nt):
ATGGAGCCCAGGAGGGCGGCGCCCGGGGTGCCTGGCTGGGGGTCTCGGGAGGCCGCGGGGTCGGCATCGG
CCGCGGAGCTTGTGTACCATCTAGCCGGGGCCCTGGGCACTGAGCTGCAGGATCTGGCGCGCCGTTTCGG
GCCGGAGGCGGCGGCCGGGCTGGTGCCGCTAGTGGTGCGGGCGCTGGAGCTCTTGGAACAGGCTGCCGTG
GGGCCCGCCCCGGACTCGCTGCAGGTGTCGGCGCAGCCGGCGGAGCAGGAGCTGCGGCGGCTGCGGGAGG
AGAACGAGCGCCTCCGCAGGGAGCTGCGCGCGGGGCCACAGGAGGAGCGCGCGCTGCTGCGGCAGCTCAA
GGAGGTCACGGACCGACAGCGGGACGAACTCCGGGCGCACAACCGCGACCTGCGGCAGCGCGGCCAGGAG
ACCGAGGCGTTGCAGGAGCAGCTGCAGCGCCTCCTGCTGGTGAACGCTGAGCTGCGGCACAAGCTGGCGG
CCATGCAGACCCAGCTGCGCGCCGCGCAGGACCGCGAGAGGGAGCGCCAGCAGCCTGGCGAAGCCGCGAC
TCCGCAGGCTAAAGAGCGAGCGCGGGGGCAGGCCGGGCGGCCCGGGCACCAGCACGGACAGGAGCCCGAA
TGGGCGACCGCCGGCGCAGGCGCCCCAGGGAACCCTGAGGACCCGGCGGAGGCCGCGCAGCAGCTCGGGC
GCCCCTCGGAGGCAGGGCAGTGCCGCTTCAGTCGGGAGGAGTTTGAGCAGATCCTTCAGGAGCGGAATGA
ACTCAAAGCCAAAGTGTTCCTGCTCAAGGAGGAACTGGCCTACTTCCAGCGGGAGCTGCTCACAGACCAC
CGGGTCCCCGGCCTTCTGCTCGAGGCCATGAAGGTGGCTGTCCGGAAGCAGCGGAAGAAGATCAAGGCCA
AGATGTTAGGGACACCAGAGGAAGCAGAGAGCAGTGAGGATGAGGCTGGCCCATGGATCCTGCTCTCCGA
TGACAAGGGAGACCATCCCCCACCCCCGGAGTCCAAAATACAGAGTTTCTTTGGCCTATGGTATCGGGGT
AAAGCTGAATCCTCTGAGGATGAGACCAGCAGCCCTGCACCCAGCAAGCTAGGGGGAGAAGAGGAGGCCC
AACCACAGTCTCCAGCTCCTGATCCGCCCTGTTCTGCCCTCCACGAACACCTTTGTCTGGGGGCCTCAGC
CGCCCCAGAGGCCTGA

Translation (401 aa):
MEPRRAAPGVPGWGSREAAGSASAAELVYHLAGALGTELQDLARRFGPEAAAGLVPLVVRALELLEQAAV
GPAPDSLQVSAQPAEQELRRLREENERLRRELRAGPQEERALLRQLKEVTDRQRDELRAHNRDLRQRGQE
TEALQEQLQRLLLVNAELRHKLAAMQTQLRAAQDRERERQQPGEAATPQAKERARGQAGRPGHQHGQEPE
WATAGAGAPGNPEDPAEAAQQLGRPSEAGQCRFSREEFEQILQERNELKAKVFLLKEELAYFQRELLTDH
RVPGLLLEAMKVAVRKQRKKIKAKMLGTPEEAESSEDEAGPWILLSDDKGDHPPPPESKIQSFFGLWYRG
KAESSEDETSSPAPSKLGGEEEAQPQSPAPDPPCSALHEHLCLGASAAPEA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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