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Report for CCDS725.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
725.1 Public Homo sapiens 1 LRRC8C 24 110 108 CCDS HistoryNCBI Gene:84230Re-query CCDS DB by CCDS ID:725.1See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 725.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000370454.9 ENSP00000359483.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000370454.9Link to Ensembl Protein Viewer:ENSP00000359483.4Re-query CCDS DB by Nucleotide ID:ENST00000370454Re-query CCDS DB by Protein ID:ENSP00000359483
Original member Current member NCBI NM_032270.5 NP_115646.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_032270.5Link to Protein Sequence:NP_115646.3Re-query CCDS DB by Nucleotide ID:NM_032270Re-query CCDS DB by Protein ID:NP_115646Link to BLAST:NP_115646.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_115646.3 803 Q8TDW0 803 100% 0 0

Chromosomal Locations for CCDS 725.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 89686474 89686611 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 89712709 89714982 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2412 nt):
ATGATTCCCGTGACAGAATTCCGGCAGTTCTCTGAGCAGCAGCCTGCCTTCCGAGTGCTGAAGCCATGGT
GGGATGTGTTTACCGATTACCTCTCAGTAGCCATGCTCATGATCGGCGTGTTTGGATGTACTTTACAGGT
CATGCAAGACAAGATAATCTGCCTTCCGAAAAGAGTGCAGCCTGCTCAGAACCACTCTTCCCTTTCGAAT
GTCTCTCAAGCAGTTGCCAGTACCACTCCACTGCCTCCACCTAAACCATCTCCTGCTAACCCCATCACTG
TGGAAATGAAAGGCCTGAAGACAGATTTGGACCTTCAGCAGTACAGCTTTATAAATCAGATGTGTTATGA
GCGAGCCCTCCACTGGTATGCCAAGTATTTCCCTTACCTTGTCCTCATCCATACCCTGGTCTTTATGCTC
TGCAGTAACTTTTGGTTCAAATTCCCTGGTTCCAGCTCCAAAATAGAACATTTCATCTCCATTCTGGGGA
AGTGTTTTGACTCTCCTTGGACCACACGGGCTTTATCTGAAGTGTCTGGGGAGGACTCAGAAGAAAAGGA
CAACAGGAAGAACAACATGAACAGGTCCAACACCATCCAATCTGGTCCAGAAGACAGCCTGGTCAACTCT
CAGTCTTTAAAGTCCATTCCTGAGAAGTTTGTAGTTGATAAATCCACTGCAGGGGCTCTGGATAAAAAGG
AAGGTGAGCAGGCTAAGGCCTTATTTGAGAAGGTGAAGAAGTTCAGGCTGCATGTGGAAGAAGGTGATAT
TCTATATGCCATGTATGTTCGCCAGACTGTACTTAAAGTTATCAAATTCCTAATCATCATTGCATATAAT
AGTGCTCTGGTTTCCAAGGTCCAGTTTACAGTGGACTGTAATGTGGACATTCAGGACATGACTGGATATA
AAAACTTTTCTTGCAATCATACCATGGCACACTTGTTCTCAAAACTGTCCTTTTGCTATCTGTGCTTTGT
TAGTATCTATGGATTGACGTGCCTTTATACCTTATACTGGCTGTTCTACCGTTCTCTACGGGAATATTCC
TTTGAGTATGTCCGTCAGGAGACTGGAATTGATGATATTCCAGATGTGAAAAATGACTTTGCTTTTATGC
TTCATATGATAGATCAGTATGACCCTCTCTATTCCAAGAGATTTGCAGTGTTCCTGTCTGAAGTCAGTGA
AAACAAATTAAAGCAGCTGAACTTAAATAACGAATGGACTCCTGATAAACTGAGGCAGAAGCTACAGACA
AATGCCCATAATCGACTGGAATTGCCTCTTATCATGCTCTCTGGCCTTCCAGACACTGTTTTTGAAATCA
CAGAGTTGCAATCTCTAAAACTTGAAATCATTAAGAACGTAATGATACCAGCCACCATTGCACAGCTAGA
CAATCTTCAAGAGCTCTCTCTGCACCAGTGTTCTGTCAAAATCCACAGTGCGGCGCTCTCTTTCCTGAAG
GAAAACCTCAAGGTCTTGAGCGTCAAGTTTGATGACATGAGGGAACTCCCCCCCTGGATGTATGGGCTCC
GAAATCTGGAAGAGCTGTACCTAGTTGGCTCTCTAAGTCATGATATTTCCAGAAATGTCACCCTTGAGTC
TCTGCGGGATCTCAAAAGCCTTAAAATTCTCTCTATCAAAAGCAACGTTTCCAAAATCCCTCAGGCAGTG
GTTGATGTTTCCAGCCATCTCCAGAAGATGTGCATACATAATGATGGCACCAAGCTGGTGATGCTCAACA
ACTTAAAGAAGATGACCAATCTGACAGAGCTGGAGCTGGTCCACTGTGACCTGGAGCGTATTCCTCATGC
TGTGTTCAGCCTACTCAGCCTCCAGGAATTGGACCTGAAGGAAAACAATCTGAAATCTATAGAAGAAATC
GTTAGCTTTCAGCACTTAAGAAAGTTGACAGTGCTAAAACTGTGGCATAACAGCATCACCTACATCCCAG
AGCATATAAAGAAACTCACCAGCCTGGAACGCCTGTCCTTTAGTCACAATAAAATAGAGGTGCTGCCTTC
CCACCTCTTCCTATGCAACAAGATCCGATACTTGGACTTATCGTACAATGACATTCGATTTATCCCCCCT
GAAATTGGAGTTCTACAAAGTTTACAGTATTTTTCCATCACATGTAACAAAGTGGAAAGCCTTCCAGATG
AACTCTACTTCTGCAAGAAACTTAAAACTCTGAAGATTGGAAAAAACAGCCTATCTGTACTTTCACCGAA
AATTGGAAATTTGCTATTTCTTTCCTACTTAGATGTAAAAGGTAATCACTTTGAAATCCTCCCTCCTGAA
CTGGGTGACTGTCGGGCTCTGAAGCGAGCTGGTTTAGTTGTAGAAGATGCTCTGTTTGAAACTCTGCCTT
CTGACGTCCGGGAGCAAATGAAAACAGAATAA

Translation (803 aa):
MIPVTEFRQFSEQQPAFRVLKPWWDVFTDYLSVAMLMIGVFGCTLQVMQDKIICLPKRVQPAQNHSSLSN
VSQAVASTTPLPPPKPSPANPITVEMKGLKTDLDLQQYSFINQMCYERALHWYAKYFPYLVLIHTLVFML
CSNFWFKFPGSSSKIEHFISILGKCFDSPWTTRALSEVSGEDSEEKDNRKNNMNRSNTIQSGPEDSLVNS
QSLKSIPEKFVVDKSTAGALDKKEGEQAKALFEKVKKFRLHVEEGDILYAMYVRQTVLKVIKFLIIIAYN
SALVSKVQFTVDCNVDIQDMTGYKNFSCNHTMAHLFSKLSFCYLCFVSIYGLTCLYTLYWLFYRSLREYS
FEYVRQETGIDDIPDVKNDFAFMLHMIDQYDPLYSKRFAVFLSEVSENKLKQLNLNNEWTPDKLRQKLQT
NAHNRLELPLIMLSGLPDTVFEITELQSLKLEIIKNVMIPATIAQLDNLQELSLHQCSVKIHSAALSFLK
ENLKVLSVKFDDMRELPPWMYGLRNLEELYLVGSLSHDISRNVTLESLRDLKSLKILSIKSNVSKIPQAV
VDVSSHLQKMCIHNDGTKLVMLNNLKKMTNLTELELVHCDLERIPHAVFSLLSLQELDLKENNLKSIEEI
VSFQHLRKLTVLKLWHNSITYIPEHIKKLTSLERLSFSHNKIEVLPSHLFLCNKIRYLDLSYNDIRFIPP
EIGVLQSLQYFSITCNKVESLPDELYFCKKLKTLKIGKNSLSVLSPKIGNLLFLSYLDVKGNHFEILPPE
LGDCRALKRAGLVVEDALFETLPSDVREQMKTE


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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