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Report for CCDS26538.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26538.1 Public Mus musculus 13 Hk3 23 108 98 CCDS HistoryNCBI Gene:212032Re-query CCDS DB by CCDS ID:26538.1Re-query CCDS DB by GeneID:212032See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 26538.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000052949.12 ENSMUSP00000051215.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000052949.12Link to Ensembl Protein Viewer:ENSMUSP00000051215.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000052949Re-query CCDS DB by Protein ID:ENSMUSP00000051215
Original member Current member EBI ENSMUST00000126234.7 ENSMUSP00000123233.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000126234.7Link to Ensembl Protein Viewer:ENSMUSP00000123233.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000126234Re-query CCDS DB by Protein ID:ENSMUSP00000123233
Original member Current member NCBI NM_001033245.4 NP_001028417.1 Accepted alive Link to Nucleotide Sequence:NM_001033245.4Link to Protein Sequence:NP_001028417.1Re-query CCDS DB by Nucleotide ID:NM_001033245Re-query CCDS DB by Protein ID:NP_001028417Link to BLAST:NP_001028417.1
Original member Current member NCBI NM_001206390.1 NP_001193319.1 Accepted alive Link to Nucleotide Sequence:NM_001206390.1Link to Protein Sequence:NP_001193319.1Re-query CCDS DB by Nucleotide ID:NM_001206390Re-query CCDS DB by Protein ID:NP_001193319Link to BLAST:NP_001193319.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001028417.1 922 Q3TRM8 922 100% 0 0
NP_001193319.1 922 Q3TRM8 922 100% 0 0

Chromosomal Locations for CCDS 26538.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 55006171 55006315 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 55006403 55006636 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 55006806 55006961 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 55007072 55007255 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 55008675 55008774 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 55008953 55009048 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 55010697 55010816 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 55010896 55011035 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 55011148 55011443 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 55012027 55012260 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 55012442 55012597 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 55013228 55013411 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 55013487 55013586 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 55014232 55014327 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 55014427 55014546 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 55014626 55014780 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 55014973 55015129 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 55019328 55019423 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2769 nt):
ATGGCCACCATTGGGCCTTCTGGCCTGCATCCTGGAGAAAGAGCCTCAGTCTGCCCACACGAGGGCGTGC
CAAGGCCCTCAGGTAGCTTAGAACTGGAATGCTTGCAGCAATTCAAGGTGACCAGGACACAGTTGCAGCA
GATCCAAGCCAGTCTCCTGTGCTCCATGGAGCAGGCACTGAAGGGACAGGACAGTCCCGCTCCTTCTGTC
CGGATGCTGCCCACATACGTGAGGTCCACACCACACGGCACCGAGCAAGGGGATTTCCTGGTGCTGGAGC
TGGGGGCCACAGGAGCATCACTACGTGTGTTGTGGGTAACACTGACAGGCACCAAAGAATGCCGGGTGGA
GCCCAGGAGCCGGGAGTTTGTGATTCCTCAAGAGGTGATCCTAGGTGCTGGCCAGCAGCTCTTTGACTTT
GCTGCCCGATGCCTCTCTGAATTCCTGGATGCATACCCCGTGGAGAATCAGGGTCTGAAGCTTGGGTTCA
ATTTCTCTTTTCCTTGTCACCAGACAGGCTTGGACAGGAGCACCCTCATTTCCTGGACAAAAGGTTTTAG
GTGCAGCGGCGTGGAAGGCCAGGATGTGGTCCAGTTGCTAAGAGATGCCATTCAGAGGCAGGGGACCTAC
AGGATTGATGTGGTAGCCATGGTGAATGACACGGTGGGCACCATGATGGGCTGTGAGCTGGGCACCAGGC
CGTGTGAAGTCGGGCTGATTGTAGACACCGGTACCAACGCGTGCTACATGGAGGAGGCGCGGCACGTGGC
CGCTCTGGATGAGGACCGCGGCCGCACCTGTGTCAGCATCGAGTGGGGCTCCTTCTATGACGAAGATGCT
CTAGGGCCAGTACTGACCACCTTCGACTCTGCCCTGGACCGCGAGTCCCTGACTCCTGGTGCTCAAAGGT
TTGAGAAGATGATTGGAGGCCTTTACCTGGGTGAGCTGGTGAGGCTGGTTCTGGTCCACTTGACCCAGCA
CGGGGTCCTCTTTGATGGCTGCGCCTCTCCTGCGTTGCTGAGTCAAGGCTGTATCCTCCTGGACCACGTG
GCTGAGATGGAGGACACCGCCACTGGGACAGCCCGCGTCCACACCATCCTGCAGGACTTGGGTCTGAGCC
CTCGGGCCTCAGATGCTGAACTGGTGCAATATGTGTGCGTGGCTGTGTGCACACGGGCTGCCCAGCTCTG
TGCGGCTGCCCTGGCTGCAGTCCTCTCCCGCCTCCAGCACAGCAGGGAGCAGCAGACATTGCAAGTGGCT
GTGGCCACTGGAGGGCGAGTGTTTGAACGACACCCCAGGTTCCTCCGAATCCTAAAGGAGACGGTAACAC
TCCTGGCCCCAAACTGTGATGTCTCCTTCATCCCCTCTGTGGATGGTGGTGGCCGGGGTGTGGCAATGGT
GACAGCTGTGGCTGCCCGCCTGGCTGCTCACAGGCGCATCCTGGAAGAGACCCTGGCACCATTTCAGCTG
ACCTTGGAGCAGATGACAGTGGTGCAGGCACAAATGCGGGAAGCCATGATCAGGGGGCTTCAAGGAGAGG
CCTCCTCCCTCCGCATGCTGCCCACTTACGTCCGAGCGACGCCCGACGGCAGCGAGCGAGGTGATTTCCT
GGCCTTGGACCTAGGGGGCACCAACTTCCGGGTCCTGTTGGTACGAGTGGCGGAGGGCAGTGTGCAGATC
ATCAACCAGGTCTACTCCATTCCTGAGTGTAGAGCCCAGGGCTCTGGACAGAAGCTCTTTGACCATATTG
TGGACTGCATCGTGGACTTCCAGAAGAGGCAGGGCCTTAGTGGACAGAGCCTACCCCTGGGTTTCACCTT
CTCTTTCCCATGCAAGCAGCTTGGCCTGGACCAGGGCATCCTCCTGAATTGGACTAAGGGGTTCAATGCA
TCAGGCTGTGAGGGCCAGGATGTTGTGTATCTATTACGGGAAGCCATTAGGCGCAGACAGGCAGTGGAGC
TGAATGTGGTTGCCATTGTCAATGACACGGTGGGGACCATGATGTCCTGTGGCTATGATGATCCCCGTTG
TGAGATGGGCCTCATTGTCGGAACCGGCACCAACGCCTGTTACATGGAAGAGCTCCGCAATGTGGCAAGT
GTGCCTGGGGACTCGGGCCTCATGTGCATCAACATGGAGTGGGGTGCCTTTGGGGATGATGGCTCACTGG
GCACACTCAGCACCCGCTTTGACACCAGTGTGGACCAGGCATCCATCAATCCAGGCAAACAGAGGTTTGA
GAAAATGATCAGCGGTATGTACTTGGGGGAGATCGTCCGCCATATCCTCCTGCACTTAACCAATCTCGGA
GTTCTCTTCCGAGGCCAGAAGACTCAATGCCTTCAGGCCAGGGACATCTTCAAGACTAAGTTCCTCTCTG
AGATCGAAAGTGATAGCCTGGCCCTGCGTCAGGTCCGAGCCATCCTGGAAGATCTGGGGCTGACTCTGAC
ATCTGATGACGCCTTGATGGTCCTGGAAGTGTGCCAGGCTGTGTCTCGCAGGGCTGCCCAACTCTGTGGG
GCAGGTGTGGCTGCCGTGGTGGAGAAGATTCGGGAGAACCGGGGCCTGCAGGAGCTGACAGTGTCTGTGG
GAGTAGATGGGACACTCTACAAGCTACATCCTCACTTCTCCAAGCTGGTGTCGGCAACAGTCCGGAAGCT
AGCCCCTCAGTGCACCGTCACCTTTTTGCAGTCGGAGGATGGGTCTGGCAAAGGCGCAGCTTTGGTTACT
GCTGTTGCTTGTCGCCTTACCCAGATGGCCCACGTCTGA

Translation (922 aa):
MATIGPSGLHPGERASVCPHEGVPRPSGSLELECLQQFKVTRTQLQQIQASLLCSMEQALKGQDSPAPSV
RMLPTYVRSTPHGTEQGDFLVLELGATGASLRVLWVTLTGTKECRVEPRSREFVIPQEVILGAGQQLFDF
AARCLSEFLDAYPVENQGLKLGFNFSFPCHQTGLDRSTLISWTKGFRCSGVEGQDVVQLLRDAIQRQGTY
RIDVVAMVNDTVGTMMGCELGTRPCEVGLIVDTGTNACYMEEARHVAALDEDRGRTCVSIEWGSFYDEDA
LGPVLTTFDSALDRESLTPGAQRFEKMIGGLYLGELVRLVLVHLTQHGVLFDGCASPALLSQGCILLDHV
AEMEDTATGTARVHTILQDLGLSPRASDAELVQYVCVAVCTRAAQLCAAALAAVLSRLQHSREQQTLQVA
VATGGRVFERHPRFLRILKETVTLLAPNCDVSFIPSVDGGGRGVAMVTAVAARLAAHRRILEETLAPFQL
TLEQMTVVQAQMREAMIRGLQGEASSLRMLPTYVRATPDGSERGDFLALDLGGTNFRVLLVRVAEGSVQI
INQVYSIPECRAQGSGQKLFDHIVDCIVDFQKRQGLSGQSLPLGFTFSFPCKQLGLDQGILLNWTKGFNA
SGCEGQDVVYLLREAIRRRQAVELNVVAIVNDTVGTMMSCGYDDPRCEMGLIVGTGTNACYMEELRNVAS
VPGDSGLMCINMEWGAFGDDGSLGTLSTRFDTSVDQASINPGKQRFEKMISGMYLGEIVRHILLHLTNLG
VLFRGQKTQCLQARDIFKTKFLSEIESDSLALRQVRAILEDLGLTLTSDDALMVLEVCQAVSRRAAQLCG
AGVAAVVEKIRENRGLQELTVSVGVDGTLYKLHPHFSKLVSATVRKLAPQCTVTFLQSEDGSGKGAALVT
AVACRLTQMAHV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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