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Report for CCDS3539.1 (current version)
CCDS |
Status |
Species |
Chrom. |
Gene |
CCDS Release |
NCBI Annotation Release |
Ensembl Annotation Release |
Links |
3539.1 |
Public |
Homo sapiens |
4 |
CABS1 |
24 |
110 |
108 |
![CCDS History](IMG/ccds-History.jpg) ![](/corehtml/transparent.gif) ![NCBI Gene:85438](IMG/ccds-Gene.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by CCDS ID:3539.1](IMG/ccds-Cquery.jpg) ![](/corehtml/transparent.gif) ![See the combined annotation on chromosome 4 in Sequence Viewer](IMG/ccds-SeqViewer.jpg) ![](/corehtml/transparent.gif) |
Public Note for CCDS 3539.1 |
This CCDS ID represents the human ortholog of the protein described in PMIDs: 19208547 and 19271754. This transcript is supported by AK057459.1. It should be noted this transcript is predicted to undergo nonsense-mediated mRNA decay (NMD). However, the protein is represented because it was detected endogenously in mouse and rat (PMIDs: 19208547 and 19271754, respectively). It is likely that the majority of transcripts representing this variant will undergo NMD, while some low level of NMD escape may allow for the expression of this protein. |
Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23
Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)
Attributes |
Nonsense-mediated decay (NMD) candidate |
Sequence IDs included in CCDS 3539.1
Original |
Current |
Source |
Nucleotide ID |
Protein ID |
MANE |
Status in CCDS |
Seq. Status |
Links |
---|
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENST00000273936.6 |
ENSP00000273936.4 |
MANE Select |
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENST00000273936.6](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSP00000273936.4](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENST00000273936](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSP00000273936](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_033122.4 |
NP_149113.3 |
MANE Select |
Accepted |
alive |
![Link to Nucleotide Sequence:NM_033122.4](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_149113.3](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_033122](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_149113](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_149113.3](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
RefSeq |
Length |
Related UniProtKB/SwissProt |
Length |
Identity |
Gaps |
Mismatches |
NP_149113.3 |
395 |
Q96KC9 |
395 |
100% |
0 |
0 |
Chromosomal Locations for CCDS 3539.1
Assembly GRCh38.p14 (GCF_000001405.40)
CCDS Sequence Data |
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Blue highlighting indicates alternating exons. | Red highlighting indicates amino acids encoded across a splice junction. | | Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair. |
Nucleotide Sequence (1188 nt): ATGGCTGAAGATGGTTTGCCCAAAATTTATTCTCATCCTCCAACAGAAAGCAGTAAAACACCAACTGCAG CAACCATTTTCTTTGGGGCTGACAATGCTATTCCCAAATCAGAAACAACTATTACTTCAGAAGGAGACCA CGTCACTTCAGTAAATGAATATATGCTAGAAAGCGATTTTTCAACAACTACAGACAACAAACTGACAGCT AAAAAGGAAAAACTCAAATCAGAAGATGATATGGGGACCGACTTTATTAAGTCAACAACTCACCTACAGA AAGAAATTACCTCTCTGACTGGCACTACAAACTCCATAACAAGAGACTCTATTACCGAACATTTCATGCC AGTGAAAATTGGGAATATTTCATCACCAGTTACTACTGTTTCTTTAATAGATTTTTCCACTGACATAGCA AAAGAAGATATCCTCTTAGCTACCATTGACACAGGAGATGCAGAGATCTCAATAACCTCTGAAGTCTCTG GCACACTAAAGGACAGCAGTGCTGGTGTTGCTGACGCTCCTGCCTTTCCACGTAAAAAGGATGAAGCTGA TATGAGCAATTATAATTCCTCCATCAAATCCAATGTCCCTGCTGATGAGGCTGTCCAGGTCACTGATTCC ACTATTCCTGAGGCTGAAATCCCTCCTGCTCCTGAAGAAAGCTTCACTACTATTCCAGACATAACTGCCC TTGAAGAAGAGAAAATAACCGAAATTGACCTAAGTGTTTTAGAAGATGACACCAGTGCTGTGGCTACATT AACTGACTCTGATGAGAAGTTTATCACTGTGTTTGAACTCACTACCTCTGCTGAAAAAGACAAAGATAAA CGGGAAGATACTCTGCTAACTGATGAAGAAACTACCGAGGGAGCCAGTATTTGGATGGAGAGAGATACTG CAAATGAAGCAGAGACCCATTCTGTTTTGCTTACTGCTGTTGAATCCAGATATGACTTCGTTGTCCCTGC ATCAATAGCTACAAACCTAGTGGAAGAATCATCTACAGAAGAAGATTTGTCTGAAACTGATAATACAGAG ACTGTACCTAAGATCACTGAGCCATTTTCTGGAACTACCTCTGTATTAGATACCCCAGACTATAAGGAAG ACACCTCCACAACTGAAACGGATATCTTTGAACTACTGAAAGAAGAACCCGATGAGTTCATGATTTAA
Translation (395 aa): MAEDGLPKIYSHPPTESSKTPTAATIFFGADNAIPKSETTITSEGDHVTSVNEYMLESDFSTTTDNKLTA KKEKLKSEDDMGTDFIKSTTHLQKEITSLTGTTNSITRDSITEHFMPVKIGNISSPVTTVSLIDFSTDIA KEDILLATIDTGDAEISITSEVSGTLKDSSAGVADAPAFPRKKDEADMSNYNSSIKSNVPADEAVQVTDS TIPEAEIPPAPEESFTTIPDITALEEEKITEIDLSVLEDDTSAVATLTDSDEKFITVFELTTSAEKDKDK REDTLLTDEETTEGASIWMERDTANEAETHSVLLTAVESRYDFVVPASIATNLVEESSTEEDLSETDNTE TVPKITEPFSGTTSVLDTPDYKEDTSTTETDIFELLKEEPDEFMI
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