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Report for CCDS90840.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
90840.1 Public Homo sapiens 1 CFAP74 24 110 108 CCDS HistoryNCBI Gene:85452Re-query CCDS DB by CCDS ID:90840.1See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 24, NCBI annotation release 110, Ensembl annotation release 108

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 90840.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000682832.2 ENSP00000508276.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000682832.2Link to Ensembl Protein Viewer:ENSP00000508276.2Re-query CCDS DB by Nucleotide ID:ENST00000682832Re-query CCDS DB by Protein ID:ENSP00000508276
Original member Current member NCBI NM_001304360.2 NP_001291289.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001304360.2Link to Protein Sequence:NP_001291289.1Re-query CCDS DB by Nucleotide ID:NM_001304360Re-query CCDS DB by Protein ID:NP_001291289Link to BLAST:NP_001291289.1

Chromosomal Locations for CCDS 90840.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 1922287 1922388 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 1922589 1922723 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 1922985 1923145 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 1923367 1923499 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 1923775 1923929 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 1924391 1924520 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 1925783 1925938 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 1926228 1926347 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 1926457 1926512 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 1926652 1926761 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 1926894 1927028 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 1927607 1927746 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 1928784 1928882 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 1930060 1930336 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 1938855 1938988 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 1939594 1939767 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 1940316 1940403 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 1942028 1942156 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 1944331 1944452 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 1946317 1946439 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 1946990 1947054 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 1955691 1955850 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 1956620 1956784 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 1959120 1959209 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 1959964 1960030 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 1963749 1963867 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 1964888 1965061 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 1966371 1966526 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 1968635 1968833 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 1970659 1970816 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 1971980 1972082 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 1972937 1973047 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 1974025 1974198 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 1985386 1985490 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 1986937 1987035 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 1988512 1988655 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 1988889 1988973 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 1990890 1990956 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4920 nt):
ATGGAGGATGACGGCAGCCTGCTCCCTGAGGACGAGCTTTTGGCCGATGCCCTTCTTTTGGAAGATGAAA
GAGATGAATTAGAGGATCCGGAGTTTGACATCAAATGTCTTCTACAGGAAGCTGAGGATGACGTGGACCC
GGGACACAGCAGCTCAGTGAAAGAACTAGATACTGATGCTGATAAATTGAAGAAGAAAACAGCTGAGGAC
AGAACGCAGGCATTTCACCTGCGGCAGAACCTGAGCGCCCTGGATAAGATGCATGAGGAGCAAGAGCTTT
TCACTGAGAAGATGAGAGGGGAGCTGCGCGCCTGTCGGCAGAGGCGGGACCTGATCGACAAGCAGCAGGA
GGCTGTGGCAGCCGAGATCGCCACAGAGGAAGAGGCGGGCAACATGGCCGCTGTGGGCCGCCTCCAGGCC
GTGTCCAGACGCCTGTTTGCAGAGCTGGAGAACGAGAGAGACCTGCAGTCGAGGACTGAGGCCGTGCTGA
AGGAGAGCGAGAACACCATGTGGCACATCGAGATCCAGGAGGGGCGACTCGAGGCCTTCCGGACAGCTGA
CCGTGAGGAGGTGGAGGCCACGGGGCGGCGGCTCCAGGTGCGCGCAGCCGAGCAGCTCTGCAGAGAGCAG
GAGGCCCTGGGGAAGGTGGAGCGGAACCGACTGCTGAGGATCAGGAAGTCCCTGAACACCCAGAAGGAGC
TCGGGCTCAGGCACCAGAAGCTGCTGGAGGACGCCCGGAAGAACCACAAGGTTGCCGTGCGGTTCCTGAA
GGCCTCCCTGGGAAGAATCCGAGAGCAAGAGAAGAAGGAGGAGATGGAGTGCCACGAGTACATGAGGCGA
CGCATGGATGCGGTGGTGGCGCTGAAGGGCAGCATCTCCGCGAACCGGGACACACTGCGGAAGTTCCAAG
CATGGGACCGTGCCAAGGCAGAGCTGGCGGAGCAGAGGGTCCAGGCTGAGAAGAAGGCGATTCTGGCCCA
GGGCAGGGATGCATTCAGGCACCTTGTCCACCAGCGCCGGCGCCAGGAGCTGGAGGCCCAGAAGAGGGCC
TTTGAGGAGGAGCAGAAGCTCAGAAAGCAGGAGATCATCAGTCGGATTCTGAAAGAGGAGGCTGAGGAGG
AAAAGAGGAAGAAACAGCATCCCCCCACCAGTGCCAGGCACCGGCTGACCCTGAGGGACAAGACCTGGAA
CTACATTTCTGACTTTTGCAAGAAGACCACAGTCCCAACCAACACGTACACACTGGACTACGAGGCTGCT
GCAGGCCCCGGGCCCTCTCGGTTGCTGGAAGTCGTTTCCAGTGAGCTTATCCAGGGGGACCCCGGGGCCA
GCTCAGAGGAGGAAACGTTAGCTGAGCCCGAGATCTCTGGGCTTTGGAATGAAGACTACAAGCCATACCA
GGTGCCCAAGGAGGACGTGGACCGAAAGCCCGTGGGCGGGACAAAGATGGACAAGGACATCCTGGAGCGC
ACGGTGGAGCGGCTGCGGAGCAGGGTGGTCCACAAGCAGGTGGTGTGGGGGCGTGAGTTCCAAGGACGCC
CCTTCAACAGCAAACCGGAGCTCCTCCACTTCCAGGACTTTGATATTGGCAAAGTGTACAAGAAAAAGAT
CACGTTGGTAAACACCACCTACACGATCAACTACTGCAAGCTGGTGGGCGTGGAGGAGCACCTCCGGGAC
TTCATCCACGTTGACTTTGACCCCCCTGGCCCCCTGTCAGCCGGAATGTCCTGTGAAGTGCTTGTCACCT
TCAAGCCGATGATAAACAAGGATCTAGAAGGAAATATCTCATTTTTGGCTCAGACGGGCGAGTTTTCAGT
TCCACTGAAATGTTCAACAAAGAAATGTTCGCTGTCCCTCGACAAGGAGCTCATTGACTTCGGCAGCTAC
GTGGTAGGAGAGACCACGTCTCGGACCATCACGCTGACCAACGTTGGGGGCTTGGGCACGACTTTCAAGT
TCCTGCCAGCTTCAGAGCCCTGTGAGATGGACGACTCCCAGTCTGCCCTGAAATTAAGCAGTCTCCTGAC
CTACGAAGATAAAAGCTTGTATGACAAAGCCGCCACCAGCTTCTCTGAGCAGCAGCTAGAGGGCACGGAG
TCCTCCCAGGCGGACATGCAGAGCCGGAAGGAGCTGGAGAAGCTGGACAAGGAGCAGGAGGAGGAGCAGC
CCGCAGAACCAGAGAGATTAACCACAGTGATACCTCCCAGCGAAGAGCAGACGGAGATCACGCTGGGGGA
GGTAACAGAAGGGGAAATTGGCCCCTTCAGCTCCATCAAGGTGCCCATCGTCTTCACTCCGGTCGTCCCA
GGCGACGTCCAAGCCAGGTTCAAAGTCACGTTTAAGAACCCCCAGTGCCCCACGCTGCATTTCAGGGTCG
TGGGCGTGGCCATCGATGTGCCGGTCTGGGTGCCGAAGCCCAGCGTGGACCTGAAGATCTGCATGTATGA
CCGGCTCTACCAGGACTCTGTGCTCGTGCACACGCGGTCGAAAGCTGCCCTGCGCCTGAAGTTCGAGGTG
TGCAAGGAGCTGAGGGCCCACCTGGAGCTCCTGCCCAAGACAGGCTATATCCAGGCACAGTCGTCCTACT
CCGTGCAGCTCAAGTTCCTGCCGCGACACTCCCTCCCGGAGGACGCAGGGAGGTATTTTGACAAGGAGAC
CCGAGTCCTGGAGGCCCCGATGACCATATGGGTTGCCGACCAGAACAAGCCAGTGGGATTCACCGTGCAT
GCCATTGTCACCACCTCGGACCTGGAGCTCAGTCCCTCGGAGGTGGATTTTGGCTACTGCACCATCTATG
AGGCCATCAGGACGGAAATCAGCCTCCACAACCACTCGCTCCTGCCCCAGGAGTTCGGGTTCGTCAGGCT
TCCCAAGTTTGTGGACGTCCAACCCAACGATGGGTTTGGGACGATCCTGCCCCTGGAAACGCTGCAGTTC
TGTGTGATCTTCCAGCCCACCAAGGCCGAGGAACACAGATTCCAACTGACCTGCAAGTCTGAGATCAACC
GGTGCTTCAAGCTGTCTTGCCGGGCTGTAGGCGTCCACCCACCCCTGGAGCTGTCCCACTACCAGATCAA
GTTTGCCGCCACGGCCCTATACGACACCTCCGTGGCTACAGTGTACGTCATCAACTCTCACCTGAGCATG
AGCTCACCGACCCACTCCAAGCCCCGCATTGGCTCAGAGGACGCCTCTCCCATGGGGCCCACGTCTTTCG
AGTTCCTGCTGCCCCCAGACTCGCCTATCACCATCTCGCCCTCAGTGGGGACCGTGTGGCCAGGAAAGAG
GTGCCTGGTCCAGGTGGCCTTCCGGCCAGTGCTGCCCGAGAAGCTGATCCGCCAGGAAGCCCTCCCACTC
CTGAACAAAGAAATGGAGACCAAATCTTTCCGAAAGAATATGGCCCCCCAGAGGAAGGACCTGCATGGAC
TGTCATTCTCCGTTCTTCGAGCACAGAACCGCGACAAGCTGTTCAAAGTCTCTGTCCCCCACGTCCTGGA
GATGCGGAAGCGGGAGCTGAGGCCCAGTTCCGACGAGTACCAGGCCGCCCGAGCCACCCTGCTCAGAGCG
TTCCAGGCGAAGTTTGACACATTTGTAGTTCCCTGTGTTGTTGCCAGTGGCGACATCAAAGACAGGAAGG
GGTCAGAACCCCTGAGCTTCAGCCCCCACAACACCCTGTACCTGGAGCTGTGGTGCCCGACGGTGGCACC
ATCTGTTGTGGTGACGTCCCATAAAGGCAAGACCATCTTTAACTTCGGCGACGTCGCTGTGGGGCACCGC
AGTATCAAGAAGATCTCCATCCAGAACGTCTCTCCCGAGGATCTGGCCCTGGACTTCTCCCTGCTGAACC
CCAACGGCCCCTTTGTCCTGCTGAACCACTCCAGCCTGCTGCGTGCAGGTGGGACCCAGGTCCTGGTGCT
TTCCTTCTCTCCCCACGAGAGCATCCTGGCTCAAGAAACACTGGACATCATCACCAAGAGAGGCACGCTC
ACCCTCACCCTCATGGGCACTGGCGTGGCGTCCATGATCACGTGCTCCATTGAAGGCAGCGTCCTCAACA
TGGGCTATGTGATTGCCGGAGAGTCTGTGTCCTCAGGCTTCAAGCTGCAGAACAACTCTCTGCTCCCCAT
CAAGTTCTCCATGCACCTGGACAGCCTCTCCAGCACCCGGGGCCGGGGCCAGCAGCAGCTGCCGCAGTTC
CTCAGCTCGCCCTCCCAGAGGACGGAGGTGGTCGGGACGCAGAATCTCAACGGTCAGAGCGTGTTCAGCG
TGGCCCCCGTCAAGGGCGTCATGGACCCCGGGAAGACACAAGACTTCACTGTCACCTTCAGCCCCGACCA
CGAAAGCCTCTACTTCTCCGACAAGCTCCAGGTGGTGCTCTTTGAAAAGAAAATCTCCCACCAGATCCTG
CTGAAGGGTGCCGCCTGTCAGCACATGATGTTCGTGGAGGGCGGCGACCCCCTGGACGTGCCCGTGGAGT
CTCTGACAGCGATCCCTGTATTTGACCCCAGGCACAGAGAGGCCAGCTCCCGGCCAGGCCCTCTCTCTCC
AGAAGCTGAGGAGCTGAGGCCCATCCTGGTGACCCTGGACTACATCCAGTTTGACACAGACACGCCAGCC
CCACCTGCCACCCGAGAGCTGCAGGTGGGCTGTATCCGGACCACCCAGCCATCTCCAAAGAAGACCGTTG
AGTTCAGCATAGACAGCGTCGCATCCCTGCAGCACAAGGGTTTCTCTATTGAGCCCTCCAGGGGCTCCGT
GGAGCGCGGCCAGACGAAGACCATCAGCATCTCCTGGGTGCCACCTGCGGACTTTGATCCAGACCACCCA
CTCATGGTGTCGGCCCTGCTGCAGCTAAGGGGGGATGTGAAGGAGACCTACAAGGTCATCTTTGTAGCCC
AGGTGTTGACTGGCCCCTAA

Translation (1639 aa):
MEDDGSLLPEDELLADALLLEDERDELEDPEFDIKCLLQEAEDDVDPGHSSSVKELDTDADKLKKKTAED
RTQAFHLRQNLSALDKMHEEQELFTEKMRGELRACRQRRDLIDKQQEAVAAEIATEEEAGNMAAVGRLQA
VSRRLFAELENERDLQSRTEAVLKESENTMWHIEIQEGRLEAFRTADREEVEATGRRLQVRAAEQLCREQ
EALGKVERNRLLRIRKSLNTQKELGLRHQKLLEDARKNHKVAVRFLKASLGRIREQEKKEEMECHEYMRR
RMDAVVALKGSISANRDTLRKFQAWDRAKAELAEQRVQAEKKAILAQGRDAFRHLVHQRRRQELEAQKRA
FEEEQKLRKQEIISRILKEEAEEEKRKKQHPPTSARHRLTLRDKTWNYISDFCKKTTVPTNTYTLDYEAA
AGPGPSRLLEVVSSELIQGDPGASSEEETLAEPEISGLWNEDYKPYQVPKEDVDRKPVGGTKMDKDILER
TVERLRSRVVHKQVVWGREFQGRPFNSKPELLHFQDFDIGKVYKKKITLVNTTYTINYCKLVGVEEHLRD
FIHVDFDPPGPLSAGMSCEVLVTFKPMINKDLEGNISFLAQTGEFSVPLKCSTKKCSLSLDKELIDFGSY
VVGETTSRTITLTNVGGLGTTFKFLPASEPCEMDDSQSALKLSSLLTYEDKSLYDKAATSFSEQQLEGTE
SSQADMQSRKELEKLDKEQEEEQPAEPERLTTVIPPSEEQTEITLGEVTEGEIGPFSSIKVPIVFTPVVP
GDVQARFKVTFKNPQCPTLHFRVVGVAIDVPVWVPKPSVDLKICMYDRLYQDSVLVHTRSKAALRLKFEV
CKELRAHLELLPKTGYIQAQSSYSVQLKFLPRHSLPEDAGRYFDKETRVLEAPMTIWVADQNKPVGFTVH
AIVTTSDLELSPSEVDFGYCTIYEAIRTEISLHNHSLLPQEFGFVRLPKFVDVQPNDGFGTILPLETLQF
CVIFQPTKAEEHRFQLTCKSEINRCFKLSCRAVGVHPPLELSHYQIKFAATALYDTSVATVYVINSHLSM
SSPTHSKPRIGSEDASPMGPTSFEFLLPPDSPITISPSVGTVWPGKRCLVQVAFRPVLPEKLIRQEALPL
LNKEMETKSFRKNMAPQRKDLHGLSFSVLRAQNRDKLFKVSVPHVLEMRKRELRPSSDEYQAARATLLRA
FQAKFDTFVVPCVVASGDIKDRKGSEPLSFSPHNTLYLELWCPTVAPSVVVTSHKGKTIFNFGDVAVGHR
SIKKISIQNVSPEDLALDFSLLNPNGPFVLLNHSSLLRAGGTQVLVLSFSPHESILAQETLDIITKRGTL
TLTLMGTGVASMITCSIEGSVLNMGYVIAGESVSSGFKLQNNSLLPIKFSMHLDSLSSTRGRGQQQLPQF
LSSPSQRTEVVGTQNLNGQSVFSVAPVKGVMDPGKTQDFTVTFSPDHESLYFSDKLQVVLFEKKISHQIL
LKGAACQHMMFVEGGDPLDVPVESLTAIPVFDPRHREASSRPGPLSPEAEELRPILVTLDYIQFDTDTPA
PPATRELQVGCIRTTQPSPKKTVEFSIDSVASLQHKGFSIEPSRGSVERGQTKTISISWVPPADFDPDHP
LMVSALLQLRGDVKETYKVIFVAQVLTGP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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