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Report for CCDS3032.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
3032.1 Public Homo sapiens 3 SNX4 24 110 108 CCDS HistoryNCBI Gene:8723Re-query CCDS DB by CCDS ID:3032.1See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 3032.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000251775.9 ENSP00000251775.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000251775.9Link to Ensembl Protein Viewer:ENSP00000251775.4Re-query CCDS DB by Nucleotide ID:ENST00000251775Re-query CCDS DB by Protein ID:ENSP00000251775
Original member Current member NCBI NM_003794.4 NP_003785.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_003794.4Link to Protein Sequence:NP_003785.1Re-query CCDS DB by Nucleotide ID:NM_003794Re-query CCDS DB by Protein ID:NP_003785Link to BLAST:NP_003785.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_003785.1 450 O95219-1 450 100% 0 0

Chromosomal Locations for CCDS 3032.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 125447779 125447826 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 125451305 125451419 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 125453810 125453955 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 125457266 125457365 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 125460771 125460860 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 125469454 125469519 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 125476695 125476756 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 125480247 125480319 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 125489408 125489463 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 125497341 125497388 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 125497834 125497983 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 125498059 125498194 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 125504623 125504744 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 125520032 125520172 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1353 nt):
ATGGAGCAGGCACCTCCGGACCCCGAGCGGCAGCTCCAGCCGGCGCCCTTGGAGCCGCTGGGCTCCCCAG
ACGCTGGGCTGGGGGCTGCGGTCGGCAAGGAAGCGGAGGGGGCCGGAGAAGAGAGCTCTGGGGTCGACAC
GATGACACACAATAATTTTTGGTTGAAGAAGATAGAAATCAGTGTTTCAGAAGCAGAAAAACGAACTGGA
AGAAATGCCATGAACATGCAAGAAACATATACTGCTTACCTCATTGAAACAAGGTCAGTTGAACATACCG
ATGGTCAGAGTGTCCTAACAGACTCACTATGGCGGCGATATAGTGAATTTGAGTTGTTGAGAAGCTACCT
TTTAGTTTACTATCCACATATTGTTGTGCCACCTCTGCCAGAAAAACGGGCAGAATTTGTTTGGCATAAA
CTCTCTGCTGACAACATGGATCCAGATTTTGTGGAGAGGCGACGGATTGGTTTAGAAAACTTTCTCTTGA
GGATTGCTTCACATCCCATCCTTTGTAGAGACAAAATCTTCTATCTGTTTTTAACACAGGAAGGTAACTG
GAAGGAGACTGTGAATGAAACTGGGTTTCAGCTGAAGGCAGACTCCAGGTTAAAAGCGCTTAATGCAACA
TTCAGAGTGAAAAACCCAGACAAGAGATTTACTGACCTTAAGCACTATAGTGATGAACTGCAGTCTGTCA
TCTCACATCTTCTTCGAGTCAGAGCTAGAGTAGCAGATCGACTCTATGGTGTATATAAAGTACATGGGAA
TTATGGTCGAGTTTTCAGTGAATGGAGTGCCATAGAAAAAGAAATGGGTGATGGACTGCAGAGTGCTGGT
CATCATATGGATGTGTATGCATCTTCTATTGATGATATTTTGGAAGATGAAGAACATTATGCAGATCAGT
TAAAAGAGTATCTTTTTTATGCAGAAGCATTGCGGGCTGTGTGCAGGAAACATGAACTTATGCAGTATGA
CTTGGAGATGGCTGCTCAGGACTTAGCATCCAAGAAGCAGCAGTGTGAGGAACTGGTAACTGGGACTGTG
AGAACATTCTCTTTGAAGGGAATGACTACCAAGCTCTTTGGTCAAGAAACTCCAGAGCAGAGAGAAGCCA
GAATAAAGGTGCTAGAAGAACAAATAAATGAAGGAGAACAACAGCTAAAGTCTAAAAATCTGGAAGGCAG
AGAATTTGTGAAAAACGCATGGGCTGATATTGAACGCTTCAAAGAACAAAAGAACCGAGACTTAAAGGAG
GCCCTCATAAGCTATGCAGTCATGCAGATCAGTATGTGCAAAAAGGGAATTCAAGTTTGGACCAATGCTA
AGGAATGCTTTAGCAAGATGTAA

Translation (450 aa):
MEQAPPDPERQLQPAPLEPLGSPDAGLGAAVGKEAEGAGEESSGVDTMTHNNFWLKKIEISVSEAEKRTG
RNAMNMQETYTAYLIETRSVEHTDGQSVLTDSLWRRYSEFELLRSYLLVYYPHIVVPPLPEKRAEFVWHK
LSADNMDPDFVERRRIGLENFLLRIASHPILCRDKIFYLFLTQEGNWKETVNETGFQLKADSRLKALNAT
FRVKNPDKRFTDLKHYSDELQSVISHLLRVRARVADRLYGVYKVHGNYGRVFSEWSAIEKEMGDGLQSAG
HHMDVYASSIDDILEDEEHYADQLKEYLFYAEALRAVCRKHELMQYDLEMAAQDLASKKQQCEELVTGTV
RTFSLKGMTTKLFGQETPEQREARIKVLEEQINEGEQQLKSKNLEGREFVKNAWADIERFKEQKNRDLKE
ALISYAVMQISMCKKGIQVWTNAKECFSKM


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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