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Report for CCDS12702.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
12702.1 Public Homo sapiens 19 NAPA 24 110 108 CCDS HistoryNCBI Gene:8775Re-query CCDS DB by CCDS ID:12702.1See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 12702.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000263354.8 ENSP00000263354.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000263354.8Link to Ensembl Protein Viewer:ENSP00000263354.2Re-query CCDS DB by Nucleotide ID:ENST00000263354Re-query CCDS DB by Protein ID:ENSP00000263354
Original member Current member NCBI NM_003827.4 NP_003818.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_003827.4Link to Protein Sequence:NP_003818.2Re-query CCDS DB by Nucleotide ID:NM_003827Re-query CCDS DB by Protein ID:NP_003818Link to BLAST:NP_003818.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_003818.2 295 P54920 295 100% 0 0

Chromosomal Locations for CCDS 12702.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 47488288 47488389 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 47489711 47489761 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 47490788 47490856 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 47492015 47492119 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 47492961 47493045 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 47493119 47493174 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 47493416 47493493 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 47495550 47495596 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 47500633 47500749 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 47503423 47503502 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 47514843 47514940 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (888 nt):
ATGGACAATTCCGGGAAGGAAGCGGAGGCGATGGCGCTGTTGGCCGAGGCGGAGCGCAAAGTGAAGAACT
CGCAGTCCTTCTTCTCTGGCCTCTTTGGAGGCTCATCCAAAATAGAGGAAGCATGCGAAATCTACGCCAG
AGCAGCAAACATGTTCAAAATGGCCAAAAACTGGAGTGCTGCTGGAAACGCGTTCTGCCAGGCTGCACAG
CTGCACCTGCAGCTCCAGAGCAAGCACGACGCAGCCACCTGCTTTGTGGACGCTGGCAACGCATTCAAGA
AAGCCGACCCCCAAGAGGCCATTAACTGTTTGATGCGAGCAATCGAGATCTACACAGACATGGGCCGATT
CACGATTGCGGCCAAGCACCACATCTCCATTGCTGAGATCTATGAGACAGAGTTGGTGGACATCGAGAAG
GCCATTGCCCACTACGAGCAGTCTGCAGACTACTACAAAGGCGAGGAGTCCAACAGCTCAGCCAACAAGT
GTCTGCTGAAGGTGGCTGGTTACGCTGCGCTGCTGGAGCAGTATCAGAAGGCCATTGACATCTACGAACA
GGTGGGGACCAATGCCATGGACAGCCCCCTCCTCAAGTACAGCGCCAAAGACTACTTCTTCAAGGCGGCC
CTCTGCCACTTCTGCATCGACATGCTCAACGCCAAGCTGGCTGTCCAAAAGTATGAGGAGCTGTTCCCAG
CTTTCTCTGATTCCCGGGAATGCAAGTTGATGAAAAAATTGCTAGAGGCCCACGAGGAGCAGAATGTGGA
CAGCTACACCGAGTCGGTGAAGGAATACGACTCCATCTCCCGGCTGGACCAGTGGCTCACCACCATGCTG
CTGCGCATCAAGAAGACCATCCAGGGCGATGAGGAGGACCTGCGCTAA

Translation (295 aa):
MDNSGKEAEAMALLAEAERKVKNSQSFFSGLFGGSSKIEEACEIYARAANMFKMAKNWSAAGNAFCQAAQ
LHLQLQSKHDAATCFVDAGNAFKKADPQEAINCLMRAIEIYTDMGRFTIAAKHHISIAEIYETELVDIEK
AIAHYEQSADYYKGEESNSSANKCLLKVAGYAALLEQYQKAIDIYEQVGTNAMDSPLLKYSAKDYFFKAA
LCHFCIDMLNAKLAVQKYEELFPAFSDSRECKLMKKLLEAHEEQNVDSYTESVKEYDSISRLDQWLTTML
LRIKKTIQGDEEDLR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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