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Report for CCDS38915.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
38915.1 Public Mus musculus 4 Slc30a2 23 108 98 CCDS HistoryNCBI Gene:230810Re-query CCDS DB by CCDS ID:38915.1Re-query CCDS DB by GeneID:230810See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 38915.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000105874.8 ENSMUSP00000101500.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000105874.8Link to Ensembl Protein Viewer:ENSMUSP00000101500.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000105874Re-query CCDS DB by Protein ID:ENSMUSP00000101500
Original member Current member NCBI NM_001039677.2 NP_001034766.1 Accepted alive Link to Nucleotide Sequence:NM_001039677.2Link to Protein Sequence:NP_001034766.1Re-query CCDS DB by Nucleotide ID:NM_001039677Re-query CCDS DB by Protein ID:NP_001034766Link to BLAST:NP_001034766.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001034766.1 371 Q2HJ10-1 371 100% 0 0

Chromosomal Locations for CCDS 38915.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 134343287 134343336 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 134344008 134344216 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 134345903 134346049 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 134347340 134347493 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 134348477 134348645 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 134349285 134349390 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 134351951 134352085 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 134352383 134352528 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1116 nt):
ATGCAGACTATGGACAAGCAGAACCTGCTGGAGAGCACGCGCGGAGCCCGGTCCTTCTTAGGATCTCTGT
GGAAGAGTGAAGCTAGCCGGATCCCTCCTGTGGACCTGCCCGCGGTTGAGCTGGCTGTCCAGAGCAACCA
TTATTGCCATGCCCAGAAGGATTCTGGAAGTCACCCTGACCCCGAGAAGCAGAGGGCCCGACGCAAACTC
TATGTGGCCTCTGCCATCTGCCTGGTGTTCATGATTGGCGAAATCATTGGTGGGTACCTGGCACAGAGCC
TGGCCATCATGACCGACGCTGCGCACCTGCTCACGGATTTTGCCAGCATGCTCATTAGCCTCTTCGCCCT
CTGGGTGTCTTCCCGACCAGCCACCAAGACCATGAACTTCGGCTGGCATCGAGCCGAGATCCTTGGAGCC
TTGTTGTCCGTGCTTTCCATCTGGGTGGTGACTGGGGTGCTCGTGTACCTGGCCGTGCAGCGGTTGATTT
CTGGAGATTATGAGATCAAAGGGGACACCATGTTGATCACTTCGGGCTGCGCTGTGGCTGTGAACCTCAT
AATGGGGTTGGCCCTCCATCAGTCTGGACACGGGCACAGCCATGGGAACAGCCGTGACGACAGCAGCCAG
CAGCAGAACCCCAGCGTCCGAGCTGCCTTCATTCATGTGATTGGGGACCTTCTGCAGAGTGTGGGGGTAC
TGGTGGCAGCCTATATCATATACTTCAAGCCTGAGTACAAGTACGTGGACCCCATCTGCACCTTCCTCTT
CTCCATCCTGGTCTTGGGGACAACGTTGACCATCCTAAGAGACGTGATCTTGGTCCTGATGGAAGGGACT
CCCAAAGGCGTGGACTTCACAACCGTGAAAAATCTCCTGCTGTCCGTGGATGGGGTGGAAGCCCTGCATA
GCCTGCATATCTGGGCGCTGACAGTGGCCCAGCCGGTGCTGTCTGTCCACATAGCCATTGCCCAGAATGC
TGATGCCCAGGCTGTGCTGAAGGTGGCTAGGGACCGCCTCCAGGGGAAGTTCAATTTCCACACCATGACC
ATCCAGATTGAGAAGTACTCTGAGGACATGAAGAACTGCCAGGCGTGCCAGGGCCCCTTGGAATGA

Translation (371 aa):
MQTMDKQNLLESTRGARSFLGSLWKSEASRIPPVDLPAVELAVQSNHYCHAQKDSGSHPDPEKQRARRKL
YVASAICLVFMIGEIIGGYLAQSLAIMTDAAHLLTDFASMLISLFALWVSSRPATKTMNFGWHRAEILGA
LLSVLSIWVVTGVLVYLAVQRLISGDYEIKGDTMLITSGCAVAVNLIMGLALHQSGHGHSHGNSRDDSSQ
QQNPSVRAAFIHVIGDLLQSVGVLVAAYIIYFKPEYKYVDPICTFLFSILVLGTTLTILRDVILVLMEGT
PKGVDFTTVKNLLLSVDGVEALHSLHIWALTVAQPVLSVHIAIAQNADAQAVLKVARDRLQGKFNFHTMT
IQIEKYSEDMKNCQACQGPLE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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