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Report for CCDS35983.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
35983.1 Public Mus musculus 10 Izumo4 23 108 98 CCDS HistoryNCBI Gene:71564Re-query CCDS DB by CCDS ID:35983.1Re-query CCDS DB by GeneID:71564See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 35983.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000218184.1 ENSMUSP00000151397.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000218184.1Link to Ensembl Protein Viewer:ENSMUSP00000151397.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000218184Re-query CCDS DB by Protein ID:ENSMUSP00000151397
Original member Current member NCBI NM_027829.3 NP_082105.3 Accepted alive Link to Nucleotide Sequence:NM_027829.3Link to Protein Sequence:NP_082105.3Re-query CCDS DB by Nucleotide ID:NM_027829Re-query CCDS DB by Protein ID:NP_082105Link to BLAST:NP_082105.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_082105.3 227 D3Z690-1 227 100% 0 0

Chromosomal Locations for CCDS 35983.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 80702716 80702959 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 80703049 80703129 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 80703209 80703280 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 80703730 80703756 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 80703853 80703928 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 80704039 80704086 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 80704180 80704194 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 80704418 80704435 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 80704699 80704713 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 80705064 80705151 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (684 nt):
ATGTTTGGGCAAGGCAGGCTGGGCCAGGCCATGGCCCTGCTGTTGTTTCTGGGCATGACAGCGGCGCTGG
CCCGGGGCTGCCTGCAGTGCGACCCCAATTTCGCGGAGAAGTTCTCCTTCTATCGTCACCACGTGAACCT
CAAGTCGTGGTGGGTGGGTGACATTCCTGTGTCGGGGATGCTGCTCTCCGATTGGATCCAGAACACGATG
AAGGAGCTCCATCTGGCCATTCCTGCTGAGATCACCCGGAAGAAGCTATATCAAGTAGCAGAAGCCGTGT
ACCAGAGGATGGACCAGCTGTACCAGGGGAAGATGTACTTCCCAGGGTATTTCCCCAATGAGCTGCGGGC
CATCTTCCGGGAGCAAGTGCGCCTCATCCAGAACGCCATCATAGAGAGCCGCATTGACTGTCAGCGTCAC
TGTGGTATCTACCAGTACGAGACCATCTCCTGCAGCAACTGCACGGACTCCCACGTCATTTGCTTTGGCT
ACTACTGCAAGTCATCGGCACAGTGGGAGTCAGCTGTACAGGGCCTTCTGAAATACATAAACACCTGGCA
CAAACAGGATGAAAAGATGAGAACCACCCCAGCCTTCCTGTCACAAAACATAAAGTGTCTGGAACCTCAG
CATCTGGTCAACCTGACCTTGGAAAAAGTCTCTGAGTGTCTGACCCAGCACTGA

Translation (227 aa):
MFGQGRLGQAMALLLFLGMTAALARGCLQCDPNFAEKFSFYRHHVNLKSWWVGDIPVSGMLLSDWIQNTM
KELHLAIPAEITRKKLYQVAEAVYQRMDQLYQGKMYFPGYFPNELRAIFREQVRLIQNAIIESRIDCQRH
CGIYQYETISCSNCTDSHVICFGYYCKSSAQWESAVQGLLKYINTWHKQDEKMRTTPAFLSQNIKCLEPQ
HLVNLTLEKVSECLTQH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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