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Report for CCDS79161.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
79161.1 Public Mus musculus 13 Akr1c20 23 108 98 CCDS HistoryNCBI Gene:116852Re-query CCDS DB by CCDS ID:79161.1Re-query CCDS DB by GeneID:116852See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 19, NCBI annotation release 105, Ensembl annotation release 81

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 79161.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000080361.12 ENSMUSP00000079232.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000080361.12Link to Ensembl Protein Viewer:ENSMUSP00000079232.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000080361Re-query CCDS DB by Protein ID:ENSMUSP00000079232
Original member Current member NCBI NM_001311132.1 NP_001298061.1 Accepted alive Link to Nucleotide Sequence:NM_001311132.1Link to Protein Sequence:NP_001298061.1Re-query CCDS DB by Nucleotide ID:NM_001311132Re-query CCDS DB by Protein ID:NP_001298061Link to BLAST:NP_001298061.1

Chromosomal Locations for CCDS 79161.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 4487183 4487225 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 4490190 4490272 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 4507681 4507846 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 4508168 4508277 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 4510108 4510230 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 4511206 4511283 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 4512586 4512702 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 4514261 4514428 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 4523231 4523314 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (972 nt):
ATGAATTCCAAGCAGCAGACAGTTCTTCTAAATGATGGTCACTTCATCCCTATACTCGGGTTTGGTACCT
CTGCACCTCAAGAGGTACCTAGGAGTAAGGCTACAGAAGCCACCAAAATAGCTATAGATGCTGGTTTCCG
CCATATTGATTGTGCTGCTGTGTATCAAAATGAAAAGGAGGTAGGATTAGCCATCAGAAGCAAGATTGTA
GATGGCACTGTGAAGAGGGAAGATATATTTTGCACATCAAAGGTTTGGCAAACATTTCATCGTCCAGAAC
TGGTGCAGGTATGCTTGGAACAATCATTGAAGCAACTCCAGTTAGATTATGTGGACCTGTACCTCATTCA
TTTCCCAATAGCCATGAAGCCAGGAGAGAATTATTTCCCAAAAGATGAGAATGGAAAATTCATATATGAT
GCAGTGGATATCTGTGACACCTGGGAAGCCATGGAGAAATGCAAGGATGCAGGATTGGCCAAGTCCATCG
GGGTGTGCAACTTTAACCGCAGGCAGCTGGAGAAGATCCTGAGTAAGCCGGGGCTCAAGTACAAGCCTGT
GTGCAACCAGGTAGAATGTCATCCTTATCTCAACCAGAGAAAACTTCTGGATTTCTGCAGGTCAAAAGAC
ATTGTTTTGGTTGCTCATAGTGCTCTGGGAAGTAACCGTGATAAAGAATGGGTGGACAAGAGCTTTCCTG
TTCTTTTGGATGATCCAGTTCTTGGCTCAATGGCAAAAAAGTACAATCGAACGCCTGCGCTGATTGCCCT
TCGCTACCAGGTGCAACGTGGGGTTGTGGTCCTAGCCAAGAGTTTCATTGAGAAGAGGATAAAAGAGAAT
ATGCAGGTTTTTGAATTTCAGTTGACTTCGGTGGACATGAAAGTTCTTGATGGCCTGAATAAAAATATCC
GATACATAGGTAGTTCTATTTCTGAGGACCATCCTGATTTTCCATTTTTGGATGAATACTAA

Translation (323 aa):
MNSKQQTVLLNDGHFIPILGFGTSAPQEVPRSKATEATKIAIDAGFRHIDCAAVYQNEKEVGLAIRSKIV
DGTVKREDIFCTSKVWQTFHRPELVQVCLEQSLKQLQLDYVDLYLIHFPIAMKPGENYFPKDENGKFIYD
AVDICDTWEAMEKCKDAGLAKSIGVCNFNRRQLEKILSKPGLKYKPVCNQVECHPYLNQRKLLDFCRSKD
IVLVAHSALGSNRDKEWVDKSFPVLLDDPVLGSMAKKYNRTPALIALRYQVQRGVVVLAKSFIEKRIKEN
MQVFEFQLTSVDMKVLDGLNKNIRYIGSSISEDHPDFPFLDEY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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