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Report for CCDS29169.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29169.1 Public Mus musculus 18 Pcdhb1 23 108 98 CCDS HistoryNCBI Gene:93872Re-query CCDS DB by CCDS ID:29169.1See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 29169.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000052366.4 ENSMUSP00000057519.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000052366.4Link to Ensembl Protein Viewer:ENSMUSP00000057519.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000052366Re-query CCDS DB by Protein ID:ENSMUSP00000057519
Original member NCBI NM_053126.1 NP_444356.1 Updated not alive Link to Nucleotide Sequence:NM_053126.1Link to Protein Sequence:NP_444356.1Re-query CCDS DB by Nucleotide ID:NM_053126Re-query CCDS DB by Protein ID:NP_444356
Current member NCBI NM_053126.2 NP_444356.1 Accepted alive Link to Nucleotide Sequence:NM_053126.2Link to Protein Sequence:NP_444356.1Re-query CCDS DB by Nucleotide ID:NM_053126Re-query CCDS DB by Protein ID:NP_444356Link to BLAST:NP_444356.1

Chromosomal Locations for CCDS 29169.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 18 (NC_000084.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 37264998 37267454 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2457 nt):
ATGGGAGCTGCGCGCAGGAAGCCTTTGCAGAACAGGCAGGTGGGCTCTCTTTTCCTTCTCTGGTGTGTGT
CTGTGGGAGGCGCGGCCACAATCCGCTATTCGGTGGCGGAGGAGATGGAGAGCGGTTCGTTTGTGGCTAA
TGTGGCTAAGGACCTAGGGCTAGAGGTGGGGAAGCTGGCAGAGCGTGGGGCGCGTCTAGTTGCCGAGGGT
AACAGGTTGCATTTCCGGCTCCACCGCAAGACTGGAGATTTGTTCGTCAAAGAGAAACTAGATCGCGAGG
CACTTTGTGGCAAATCTGACCCGTGTGTGCTGCATTTTGAAATTATTCTGGCCGAGCCGCTGCAGTCCTT
CCGGGTGGAAGTCAGAGTATTTGATATCAACGACAATGCACCAGTTTTTCTAAACAAAGAGCCTCTTTTA
AAGATTCCAGAGAGCACCCCCTTGGGCTCACGCTTTCCACTGCAGAGTGCCCAGGATTTGGACGTGGGAC
TCAACGGTCTCCAAAACTACACCCTGAGTGCAAACACCTATTTCCACCTGCACACACGCTTCCGAAGCCA
CGGTCCTAAATATGCAGAACTTGTGCTGGATAATCCCCTGGATAGAGAGGCGCAGCCTGAAGTCAACTTG
ACCATTACAGCTGTGGATGGTGGGTCCCCTCCCAAGTCTGGCACCGCCAACATTCGAGTGGTTGTCCTGG
ACGTCAATGACCACGTGCCCCAGTTCTCTCGCTTGGTGTACCGTGCTCAGGTGCCAGAGAACAGCGACAA
TGGCTCTTTGGTGGTGGTGGTGACTGCCACAGACCTGGATGAGGGCACCAACAAGCAGATAACTTATTCT
TTAGCTGAAAATCCAGAAGCAGTTCTACGGACATTTCTTGTTGATCCACAAACCGGAGAAGTTCGACTCC
GTGGGCCCCTAGATTTTGAAATGATAGAAACATACGACATTGACATTCAAGCTACAGATGGAGGGGGTCT
TTCTGCCCACAGCAAAGTCTTGGTGGAAGTGGTGGATGTTAACGACAATCCTCCGGAAGTGACAATCTCC
TCGGTGTCCAGCCCTCTTCCTGAGGACTCTGCACTCCAGACTGTAGTTGCTCTCTTCACTATCCGAGACC
GGGATGTGCGAGTTGGAGGAAAAATCACCTGTTTCCTCAAAGAAGATTTGCCTTTTGTAGTCAAACATAC
ATTCCGGAATTCTTACTCGCTGGTCACTGACAGAAGCTTGGATAGAGAGGATGTCTCCAGCTATAATATC
ACCCTTGTCGCCATGGATACTGGACCACCCAATCTGTCCACAGAGACTGTGATTGAAGTGGTAATAGCTG
ATGTAAATGACAATTCTCCAGTCTTCCAGGAGGATTCCTACGTCTTGACTGTTCGTGAAAACAACAGTCC
TGCAGTTTTTATTGGCAAAGTCCACGCCGAGGATCTAGATTTGGGTGAAAATGCCCAAGTAACATACTCC
CTGCTGCCTCCAAAGAGTGGTGATCTGTCAGTCTTTGCTTACATCTCCATAAACTCAGATAATGGAAAGC
TCTATGCACTAAGAACCATGGATTATGAGGCCATTCAAGACTTTCAGTTTGTAGTAAAGGCAACTGATGG
TGGTTTTCTGTCGTTGAGTAGCGAAGTTACTGTCAGAGTGGTGGTCCTGGACGACAATGACAATCGTCCA
ATGATCTTGTACCCACTGCAGAATGGCACTTTGCCCTGCAATGACCTAGTACCAAGGTCTGCAGAGGCAG
GATACCTGGTGACCAAAGTAGTAGCTGTTGATGGTGACTCTGGGCAGAATTCTTGGCTTTCATACCATCT
TCTTAAAGCCACAGACCTTGGGTTATTTTCTGTTCAAAGACAAAATGGGGAAATACGTACACTGAGGCAG
ATATCTGAGAGAGACCCCATGATGCAGAAACTGGTCATTCTTGTTCAGGATCATGGCCAACCAGCTCTCT
CCACTACGGCCTCACTTAACATCCTGCTGGTAGATGGCTTTTCAGAGCCATACTTGCAGTTCCAGGATCC
ATCCAAGCATTCTAGAAAGGTAAATCCAACCACAAAATATTTGGTCATTTCTCTGTCTGTGCTTTCTTTT
CTTTTTCTCTTGTCTGTCACTGTGATCTTTATTATACACCTCTACCAGAAGATTAAACACAGAGACAAAT
TCACAATTCAAGAGCACTTCTATGATGACTGTAATTTCCCTAACAACTTGGTTCAAGGAAGAGGCAATGG
TTCCTTATCTCAGCCTTGTCCATATGATATGTGCTCAGCCACGGGAACTGGGAATAGTGAGTTCCGTTTT
CTTAAGCGATTTATGCCCAATTTCCCATTCCCCCATGCCACTGGAGAGGTGAAAACAGAGGATGACTCCA
GTTTGCCTCCAGGTTCTAATAAAAATCGGTCTCGGGGTTCAGCGGGCCATGACCGGATAGGAGATGAGTA
TATGTAA

Translation (818 aa):
MGAARRKPLQNRQVGSLFLLWCVSVGGAATIRYSVAEEMESGSFVANVAKDLGLEVGKLAERGARLVAEG
NRLHFRLHRKTGDLFVKEKLDREALCGKSDPCVLHFEIILAEPLQSFRVEVRVFDINDNAPVFLNKEPLL
KIPESTPLGSRFPLQSAQDLDVGLNGLQNYTLSANTYFHLHTRFRSHGPKYAELVLDNPLDREAQPEVNL
TITAVDGGSPPKSGTANIRVVVLDVNDHVPQFSRLVYRAQVPENSDNGSLVVVVTATDLDEGTNKQITYS
LAENPEAVLRTFLVDPQTGEVRLRGPLDFEMIETYDIDIQATDGGGLSAHSKVLVEVVDVNDNPPEVTIS
SVSSPLPEDSALQTVVALFTIRDRDVRVGGKITCFLKEDLPFVVKHTFRNSYSLVTDRSLDREDVSSYNI
TLVAMDTGPPNLSTETVIEVVIADVNDNSPVFQEDSYVLTVRENNSPAVFIGKVHAEDLDLGENAQVTYS
LLPPKSGDLSVFAYISINSDNGKLYALRTMDYEAIQDFQFVVKATDGGFLSLSSEVTVRVVVLDDNDNRP
MILYPLQNGTLPCNDLVPRSAEAGYLVTKVVAVDGDSGQNSWLSYHLLKATDLGLFSVQRQNGEIRTLRQ
ISERDPMMQKLVILVQDHGQPALSTTASLNILLVDGFSEPYLQFQDPSKHSRKVNPTTKYLVISLSVLSF
LFLLSVTVIFIIHLYQKIKHRDKFTIQEHFYDDCNFPNNLVQGRGNGSLSQPCPYDMCSATGTGNSEFRF
LKRFMPNFPFPHATGEVKTEDDSSLPPGSNKNRSRGSAGHDRIGDEYM


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
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