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Report for CCDS29181.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29181.1 Public Mus musculus 18 Pcdhb15 23 108 98 CCDS HistoryNCBI Gene:93886Re-query CCDS DB by CCDS ID:29181.1See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 29181.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000050034.2 ENSMUSP00000059598.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000050034.2Link to Ensembl Protein Viewer:ENSMUSP00000059598.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000050034Re-query CCDS DB by Protein ID:ENSMUSP00000059598
Original member Current member NCBI NM_053140.3 NP_444370.1 Accepted alive Link to Nucleotide Sequence:NM_053140.3Link to Protein Sequence:NP_444370.1Re-query CCDS DB by Nucleotide ID:NM_053140Re-query CCDS DB by Protein ID:NP_444370Link to BLAST:NP_444370.1

Chromosomal Locations for CCDS 29181.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 18 (NC_000084.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 37473717 37476077 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2361 nt):
ATGGAGGCCAGATTGGAACAAGCTGTGCAGAAAAGGCAAGTACTGTTTCTTTATGTGTTTCTTGGAGCGT
CTTGGGCTAGCGCCGAACAGCTTCAGTATTCTGTGGCAGAGGAAACCGAGAGAGGGACTTTCCTAGCCAA
TCTAGCAAAGGATTTGGGGCTGGGGCTGGGGGAACTGTCAGCCCGGGAAGCTAGAATTGTTTCAGACCAG
AACACACGATTTTTACTGCTCAGTCCGCTTACTGGAGAATTAATTCTAAATGAGAAGCTGGACCGAGAGG
AACTGTGCGGCCCCACAGAGCCCTGTGTGCTGACTTTCCAGTTGCTGTTGGAAAGACCATTTCAGATTTA
TCGCGCTGCACTACATATCAAAGATATAAATGATAATTCTCCAGTATTCCTAGACAAAGAAATACTCTTG
AAAATATCAGAAAGTACCACTCCAGGGGCGACGCTTCTCTTGGAAAGGGCACAGGATGCCGATGTGGGAA
CGAACAGCCTGAGTAACTACACCATCAGCCCCAATGATTATTTCCATATTCACGTGCATGATGGAGGGGA
GGGGCCTATCATTCCTGAACTGGTACTGGATAAAATGCTGGACCGGGAAGAAATACCAGAATTCACTTTA
ACTCTCACAGCCTTAGATGGTGGCTCTCCACCCAGATCTGGGACAGCCTTGGTGCAAATCTTGGTGTTGG
ACATAAATGACAACTCCCCTCAATTCGTGCAGTCACTTTACAAAGTTCAGTCACCTGAAAACACCCCTGT
TGGCTCCTTGGTTGTCGCTGTGTCTGCCAGGGACTTAGACACAGGAAGTTACGGACAAATAGACTACACA
TTTTTTTATGCCACAGAAAGAATTCTCCAAACGTTTCAAATCAATTCTACATCTGGCGAACTTTATCTTA
AACGCGAACTCAACTATGAAGCGATTCAAACTTATTCGATAACTATTCAGGCCAGAGATGGTGGTGGACT
TTCTGGGAAATGTGCTGTGGTTGTAGAGGTAATGGACGTGAATGATAACCCACCTGAATTTCTCTTGTCG
TCACTTAATAGCCCAATTCCAGAAAATTCACAAGAGACAGTTGTTGCTGTATTTAAAATTAGAGACAGAG
ATTCGGGGAACAATGGAAAAACCCTGTGCTCCATTGCGAATGATCTCCCTTTCGTCCTGAAGCCATCTGT
GGAAAATTTCTATACTCTGGTAACAGAGAAGCCTTTAGATAGAGAATCAAACACTGAATACAACATCACC
ATCACAGTCACCGACATGGGCATACCCAGGCTCACAACCCAGCACACCATAACAGTGCAGGTCTCTGACA
TCAACGACAACGCCCCCACCTTCACCCAAACCTCCTACACCATGTTCGTCCGCGAGAACAACAGCCCCGC
CCTGCACATTGGCACCATCAGCGCCACAGACTCAGACTCAGGCTCCAATGCCCACATCACCTACTCGTTG
CGGCTGCCTCACGACCCGCAGCTGGCCCTGGACTCGCTCATCTCCATCAATGCAGACAATGGGCAACTGT
TCGCGCTCAGGGCTCTGGACTATGAGGCCCTGCAGGCCTTCGAGTTCCACGTGGGTGCAATAGACCAAGG
CTCCCCTGCGCTCAGCAGTCAGGCTCTGGTGCGCGTGGTGATACTGGACGACAATGACAATGCGCCCTTC
GTGCTCTACCCGATGCAGAACGCCTCTGCACCCTACACTGAGCTGCTGCCCAGGGCGGCAGAACCCGGAT
ACCTGGTCACCAAGGTGGTGGCAGTTGACCGTGATTCTGGCCAGAACGCCTGGCTGTCATTTCAGTTGCT
TAAGGCCACAGAGCCCGGACTGTTTAGTGTGTGGGCGCACAATGGTGAGGTGCGCACCACCAGGCTACTA
AGCGAGCGAGATGTGCCCAAGCATAAGCTGCTAGTGGTGGTCAAGGATAATGGAGAGCCTCCACGCTCTG
CCAGTGTCACACTGCATGTGTTGCTGGTCGATGGCTTCTCTCAGCCCTTCCTGATTCTGCCAGAGGTGGC
GCGCGACCCTGCACAAGAAGATGATGAGCTAACACTCTACCTGGTCATTGCCTTGGCTTCTGTGTCTTCT
CTCTTCCTGGTATCTGTGCTGCTGTTCGTTGGAGTAAGACTCTGCAGGAGGGCCCGGGCAGCCTCTCCGG
GTGTCTGCTTTGTGCCTGAAGAACACTTTCCTGGCCACCTGGTGGATGTCAGCGGTGCAGGGACCCTGTC
CCAGAACTACCAGTATGAGGTGTGTCTGACTGGAGGATCAGGGATAACCAGTGAATTTAAGTTTCTAAGT
CCAATTGCCTCTAACTTCCTAACCGAAAGCACAGGGAGAGAAATAGAATAA

Translation (786 aa):
MEARLEQAVQKRQVLFLYVFLGASWASAEQLQYSVAEETERGTFLANLAKDLGLGLGELSAREARIVSDQ
NTRFLLLSPLTGELILNEKLDREELCGPTEPCVLTFQLLLERPFQIYRAALHIKDINDNSPVFLDKEILL
KISESTTPGATLLLERAQDADVGTNSLSNYTISPNDYFHIHVHDGGEGPIIPELVLDKMLDREEIPEFTL
TLTALDGGSPPRSGTALVQILVLDINDNSPQFVQSLYKVQSPENTPVGSLVVAVSARDLDTGSYGQIDYT
FFYATERILQTFQINSTSGELYLKRELNYEAIQTYSITIQARDGGGLSGKCAVVVEVMDVNDNPPEFLLS
SLNSPIPENSQETVVAVFKIRDRDSGNNGKTLCSIANDLPFVLKPSVENFYTLVTEKPLDRESNTEYNIT
ITVTDMGIPRLTTQHTITVQVSDINDNAPTFTQTSYTMFVRENNSPALHIGTISATDSDSGSNAHITYSL
RLPHDPQLALDSLISINADNGQLFALRALDYEALQAFEFHVGAIDQGSPALSSQALVRVVILDDNDNAPF
VLYPMQNASAPYTELLPRAAEPGYLVTKVVAVDRDSGQNAWLSFQLLKATEPGLFSVWAHNGEVRTTRLL
SERDVPKHKLLVVVKDNGEPPRSASVTLHVLLVDGFSQPFLILPEVARDPAQEDDELTLYLVIALASVSS
LFLVSVLLFVGVRLCRRARAASPGVCFVPEEHFPGHLVDVSGAGTLSQNYQYEVCLTGGSGITSEFKFLS
PIASNFLTESTGREIE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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