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Report for CCDS39129.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39129.1 Public Mus musculus 5 Ugt2a1 23 108 98 CCDS HistoryNCBI Gene:94215Re-query CCDS DB by CCDS ID:39129.1See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 39129.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000147854.5 ENSMUSP00000114583.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000147854.5Link to Ensembl Protein Viewer:ENSMUSP00000114583.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000147854Re-query CCDS DB by Protein ID:ENSMUSP00000114583
Original member Current member NCBI NM_053184.2 NP_444414.2 Accepted alive Link to Nucleotide Sequence:NM_053184.2Link to Protein Sequence:NP_444414.2Re-query CCDS DB by Nucleotide ID:NM_053184Re-query CCDS DB by Protein ID:NP_444414Link to BLAST:NP_444414.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_444414.2 528 Q80X89 528 100% 0 0

Chromosomal Locations for CCDS 39129.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 87460392 87460671 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 87461914 87462133 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 87462889 87462976 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 87464051 87464182 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 87465408 87465556 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 87486029 87486746 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1587 nt):
ATGTTGAAGAACATTTTGCTCTGTTCTCTTCAGATAAGCCTTCTAGGAATGAGTCTTGGTGGGAACGTTC
TCATCTGGCCCATGGAAGGCAGTCACTGGCTAAATGTTAAGATCATAATAGATGAACTCCTAAGAAAAGA
GCATAATGTGACTGTCCTTGTGGCCTCCGGGGCCCTTTTCATCACACCATCATCCATCAGCCCATCTCTG
ACATTTGAAATATATCCAGTGCCCTTTGGCAAGGAAAAAATTGAAAGTGTGATCAAAGACTTTGTTTTGA
CATGGCTGGAAAACAGGCCATCTCCTTCAACTATCTGGACTTTCTATAAGGAAATGGCCAAAGTCATTGA
GGAGTTTCATTTGGTGTCCAGAGGTATCTGTGATGGCGTTCTTAAGAATGAAAAGCTGATGTCCAAGCTT
CAGAAAGAAAAGTTCGAAGTACTGTTATCAGACCCTGTATTTCCTTGTGGTGACATCGTGGCTTTAAAAC
TGGGAATTCCATTTATCTATTCCTTGCGGTTTTCCCCTGCCTCCACAGTGGAAAAGCATTGTGGAAAGGT
CCCATTCCCTCCTTCCTATGTACCTGCAATTCTGTCAGAACTCACAGACCAGATGTCCTTCACTGACCGA
GTAAGAAACTTCATTTCTTACCGAATGCAGGACTACATGTTTGAAACCCTTTGGAAGCAGTGGGATTCCT
ATTATACTAAAGCTTTAGGAAGACCCACCACACTGTGTGAGACTATGGGGAAAGCTGAGATTTGGCTAAT
GCGAACCTATTGGGATTTTGAATTTCCTCGTCCATATTTACCGAATTTTGAGTTTGTGGGAGGACTGCAC
TGCAAACCTGCCAAGCCTTTACCTAAGGAAATGGAAGAGTTTGTCCAGACCTCAGGGGAACATGGTATTG
TGGTGTTTTCTCTGGGGTCAATGGTCAAAAACCTGACAGATGAAAAGGCCAATCTCATTGCCTCAGCCCT
TGCCCAGATTCCTCAGAAGGTTTTGTGGCGATACAAAGGAAAGATACCAGACACATTAGGATCCAATACA
AGACTGTTTGATTGGATTCCTCAGAATGATCTTCTTGGACATCCCAAAACCAGAGCTTTTATCACCCATG
GTGGAACAAATGGAATCTATGAGGCTATTTACCATGGGATCCCTATGGTGGGAGTGCCCATGTTCGCTGA
CCAGCCTGACAACATTGCTCACATGAAGGCCAAAGGAGCAGCAGTGGAGGTGAACATGAACACGATGACA
AGCTCAGATCTGCTCAATGCTCTGAGAACAGTCATCAATGAGCCATCTTATAAAGAGAATGCCATGAGAC
TATCAAGAATCCACCATGACCAGCCAGTGAAGCCCCTGGACCGAGCAGTCTTCTGGATTGAGTTTGTCAT
GCGTCACAAAGGAGCCAAGCACCTTCGTGTGGCAGCCCATGACCTCAGCTGGTTTCAGTACCACTCTCTG
GATGTAATTGGGTTTCTGCTGGCCTGTGTGGCATCTGCTATATTATTGGTTGCAAAATGTTGTTTGTTTA
TATTTCAAAAAGTTGGTAAGACAGGAAAGAAGAAAAAACGTGACTAG

Translation (528 aa):
MLKNILLCSLQISLLGMSLGGNVLIWPMEGSHWLNVKIIIDELLRKEHNVTVLVASGALFITPSSISPSL
TFEIYPVPFGKEKIESVIKDFVLTWLENRPSPSTIWTFYKEMAKVIEEFHLVSRGICDGVLKNEKLMSKL
QKEKFEVLLSDPVFPCGDIVALKLGIPFIYSLRFSPASTVEKHCGKVPFPPSYVPAILSELTDQMSFTDR
VRNFISYRMQDYMFETLWKQWDSYYTKALGRPTTLCETMGKAEIWLMRTYWDFEFPRPYLPNFEFVGGLH
CKPAKPLPKEMEEFVQTSGEHGIVVFSLGSMVKNLTDEKANLIASALAQIPQKVLWRYKGKIPDTLGSNT
RLFDWIPQNDLLGHPKTRAFITHGGTNGIYEAIYHGIPMVGVPMFADQPDNIAHMKAKGAAVEVNMNTMT
SSDLLNALRTVINEPSYKENAMRLSRIHHDQPVKPLDRAVFWIEFVMRHKGAKHLRVAAHDLSWFQYHSL
DVIGFLLACVASAILLVAKCCLFIFQKVGKTGKKKKRD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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