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Report for CCDS19718.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19718.1 Public Mus musculus 5 Rcc1l 23 108 98 CCDS HistoryNCBI Gene:94254Re-query CCDS DB by CCDS ID:19718.1See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19718.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000076228.2 ENSMUSP00000075581.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000076228.2Link to Ensembl Protein Viewer:ENSMUSP00000075581.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000076228Re-query CCDS DB by Protein ID:ENSMUSP00000075581
Original member Current member NCBI NM_033572.2 NP_291050.1 Accepted alive Link to Nucleotide Sequence:NM_033572.2Link to Protein Sequence:NP_291050.1Re-query CCDS DB by Nucleotide ID:NM_033572Re-query CCDS DB by Protein ID:NP_291050Link to BLAST:NP_291050.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_291050.1 461 Q9CYF5 461 100% 0 0

Chromosomal Locations for CCDS 19718.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 134148929 134149006 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 134154124 134154209 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 134155740 134155913 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 134157591 134157678 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 134163624 134163805 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 134165339 134165423 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 134166665 134166716 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 134168212 134168278 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 134169218 134169346 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 134171847 134171976 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 134176400 134176714 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1386 nt):
ATGTTGGCGGCGGCCCGGGCTCTGCGGGGGCCGCGGCCGAGGTGGCCGACACCGGCTCGCGAGCACTGGA
CACCGGCCGGCCGTTCGCGGAGCCGGCGAGAAGCGGCCGAGGCCGAGGCGGACGTTCCGGTGTTTCAGTA
CGTGGGCGAGCGCGCGGCTCGCGCCGATCGCGTCTTCGTCTGGGGCTTCAGCTTCTCCGGGGCGCTCGGG
GTGCCCAGCTTCGTGGTGCCGTCCTCGGGGCCTGGACCGCGCGCCGGCCTGCGGCCCCGACGCAGGATCC
AGCCGGTCCCCTACCGCCTGGAGCTGGATCATAAGATTTCCTCTGCTGCCTGTGGCTATGGATTCACATT
GCTGTCCTCGAAAACCAAGGATGTTACAAAAGTCTGGGGCATGGGACTCAACAAAGATTCCCAGCTGGGA
TTCCACAGGAGCCGGAAGGATAAAACCAGGGGCTATGAGTACGTTTTGGAGCCCTCGCCTGTCCCGCTGC
CGCTGGACAGACCTCAGGAGACAAAGGTGTTGCAGGTGTCCTGCGGTCGAGCACACTCCCTTGTCCTGAC
AGACAGAGAAGGTGTCTTCAGCATGGGCAACAATTCCCACGGGCAGTGTGGCCGGAAGGTGGTGGAGGAT
GAAGTATACAGCGAGAGTCACAAAGTGCACAGGATGCAGGACTTCGATGGACAGGTGGTCCAGGTTGTCT
GTGGTCAGGACCACAGCCTGTTCCTCACAGACAAAGGTGAAGTCTATTCTTGTGGCTGGGGTGCCGATGG
ACAGACAGGCCTGGGTCACTACAACATCACCAGCACACCCAGCAAGCTGGGCGGAGACCTTGCCGGGGTG
ACCGTTGTCCAGGTCGCCACCTACGGTGACTGCTGCTTAGCTTTGTCCGCTGATGGAGGTGTCTTTGGCT
GGGGAAATTCCGAGTACCTGCAGTTGGCCTCTGTCACAGACTCCACACAGGTGAATGTCCCTCGGTGCCT
GCCTTTCTCTGGAGTAGGCAAGGTGAAGCAGGTGGCTTGTGGTGGCACAGGCTGTGCTGTACTGAACGCG
GAGGGACATGTTTTCGTCTGGGGCTATGGAATTCTTGGGAAAGGACCAAAGCTCTTGGAAACGGCAATTC
CAGAAATGATTCCACCCACGCTCTTTGGTTTGACGGAGTTTAACCCTGAAGTCCAGGTTTCCCAGATCCG
ATGTGGGCTTAGCCACTTTGCCGCACTCACCAACAAGGGTGAGCTGTTCGTGTGGGGCAAGAACATCCGA
GGGTGCTTGGGGATTGGCCGCCTGGAAGACCAGTACTTCCCATGGAGGGTGACGATGCCCGGTGAGCCTG
TGGATGTGGCGTGTGGAGTGGATCACATGGTGACTCTAGCCAAGTCATTCATCTGA

Translation (461 aa):
MLAAARALRGPRPRWPTPAREHWTPAGRSRSRREAAEAEADVPVFQYVGERAARADRVFVWGFSFSGALG
VPSFVVPSSGPGPRAGLRPRRRIQPVPYRLELDHKISSAACGYGFTLLSSKTKDVTKVWGMGLNKDSQLG
FHRSRKDKTRGYEYVLEPSPVPLPLDRPQETKVLQVSCGRAHSLVLTDREGVFSMGNNSHGQCGRKVVED
EVYSESHKVHRMQDFDGQVVQVVCGQDHSLFLTDKGEVYSCGWGADGQTGLGHYNITSTPSKLGGDLAGV
TVVQVATYGDCCLALSADGGVFGWGNSEYLQLASVTDSTQVNVPRCLPFSGVGKVKQVACGGTGCAVLNA
EGHVFVWGYGILGKGPKLLETAIPEMIPPTLFGLTEFNPEVQVSQIRCGLSHFAALTNKGELFVWGKNIR
GCLGIGRLEDQYFPWRVTMPGEPVDVACGVDHMVTLAKSFI


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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