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Report for CCDS41828.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
41828.1 Public Homo sapiens 12 WSCD2 24 110 108 CCDS HistoryNCBI Gene:9671Re-query CCDS DB by CCDS ID:41828.1See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 41828.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000332082.8 ENSP00000331933.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000332082.8Link to Ensembl Protein Viewer:ENSP00000331933.4Re-query CCDS DB by Nucleotide ID:ENST00000332082Re-query CCDS DB by Protein ID:ENSP00000331933
Original member Current member EBI ENST00000547525.6 ENSP00000448047.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000547525.6Link to Ensembl Protein Viewer:ENSP00000448047.1Re-query CCDS DB by Nucleotide ID:ENST00000547525Re-query CCDS DB by Protein ID:ENSP00000448047
Original member Current member NCBI NM_001304447.2 NP_001291376.1 Accepted alive Link to Nucleotide Sequence:NM_001304447.2Link to Protein Sequence:NP_001291376.1Re-query CCDS DB by Nucleotide ID:NM_001304447Re-query CCDS DB by Protein ID:NP_001291376Link to BLAST:NP_001291376.1
Original member Current member NCBI NM_014653.4 NP_055468.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_014653.4Link to Protein Sequence:NP_055468.2Re-query CCDS DB by Nucleotide ID:NM_014653Re-query CCDS DB by Protein ID:NP_055468Link to BLAST:NP_055468.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001291376.1 565 Q2TBF2-1 565 100% 0 0
NP_055468.2 565 Q2TBF2-1 565 100% 0 0

Chromosomal Locations for CCDS 41828.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 12 (NC_000012.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 108195833 108196214 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 108206289 108206403 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 108210121 108210305 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 108224739 108224860 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 108226990 108227164 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 108232731 108232895 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 108240344 108240544 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 108247991 108248343 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1698 nt):
ATGGCCAAGCTCTGGTTCAAATTCCAGCGGTACTTCCGCCGGAAACCTGTGCGCTTCTTTACCTTCCTGG
CACTCTACCTGACTGCTGGGAGCCTTGTCTTCCTTCACTCTGGCTTTGTGGGCCAGCCCGCTGTCTCGGG
GAACCAGGCGAACCCCGCTGCTGCAGGAGGCCCAGCTGAGGGTGCTGAGCTGTCCTTCTTGGGTGACATG
CATCTGGGCAGAGGTTTCCGGGACACAGGTGAAGCCTCAAGCATTGCTCGCAGGTACGGACCCTGGTTCA
AGGGCAAGGATGGGAATGAGAGAGCCAAGCTTGGCGACTACGGTGGAGCCTGGAGCCGAGCCCTCAAGGG
GAGGGTTGTCCGGGAGAAGGAGGAAGAGCGAGCCAAGTACATCGGCTGCTACCTGGATGACACCCAGAGT
CGGGCCCTTCGAGGAGTGTCCTTTTTTGACTACAAAAAGATGACCATCTTCCGTTGCCAGGACAACTGTG
CTGAACGGGGTTACCTGTATGGCGGGCTGGAGTTCGGCGCCGAGTGCTACTGCGGCCACAAGATCCAGGC
GACGAACGTGAGCGAGGCAGAGTGCGACATGGAGTGCAAGGGCGAGCGAGGCAGCGTGTGCGGCGGCGCC
AACCGCCTCTCTGTCTACCGGCTGCAGCTGGCCCAGGAGTCGGCCCGCAGGTATGGAAGTGCAGTGTTCC
GGGGCTGCTTCCGCAGGCCCGACAACCTTTCCCTGGCCTTACCCGTGACAGCTGCCATGCTGAACATGTC
TGTGGACAAATGCGTGGACTTCTGCACTGAGAAGGAGTACCCGCTGGCAGCTCTTGCAGGCACCGCCTGC
CACTGTGGGTTTCCCACCACCCGATTCCCGCTCCATGACAGAGAGGATGAGCAGCTCTGTGCCCAGAAGT
GCAGCGCGGAGGAGTTTGAGAGCTGCGGGACTCCTAGTTACTTCATTGTGTACCAGACACAAGTCCAAGA
CAACCGTTGCATGGACAGAAGGTTCCTGCCAGGCAAGTCCAAGCAGCTCATTGCTTTGGCCAGCTTCCCA
GGTGCTGGCAACACGTGGGCTCGCCACCTCATTGAATTGGCCACAGGCTTCTACACTGGCAGCTACTACT
TCGATGGCTCCCTCTACAACAAAGGGTTTAAAGGTGAGCGGGACCACTGGCGCAGCGGACGGACCATCTG
CATCAAGACGCACGAAAGCGGCCAGAAAGAGATCGAGGCCTTCGACGCCGCCATCCTGCTCATCCGCAAC
CCCTACAAAGCCCTCATGGCTGAGTTCAACCGCAAGTACGGCGGCCACATAGGCTTTGCTGCGCATGCCC
ACTGGAAGGGCAAAGAGTGGCCAGAGTTCGTGAGGAACTATGCCCCGTGGTGGGCCACTCACACACTGGA
CTGGCTCAAGTTTGGCAAGAAGGTGCTGGTGGTGCACTTTGAGGACCTGAAGCAGGACCTCTTTGTCCAG
CTGGGCCGGATGGTCAGCCTGCTGGGCGTGGCTGTCAGGGAGGACCGGCTGCTCTGTGTGGAGAGCCAGA
AGGATGGCAACTTCAAGCGCTCAGGGCTCCGGAAGCTCGAGTATGACCCCTATACTGCGGACATGCAGAA
GACCATCTCTGCCTACATCAAGATGGTGGATGCAGCCCTCAAAGGGCGGAACCTAACGGGTGTCCCCGAT
GACTACTACCCAAGATGA

Translation (565 aa):
MAKLWFKFQRYFRRKPVRFFTFLALYLTAGSLVFLHSGFVGQPAVSGNQANPAAAGGPAEGAELSFLGDM
HLGRGFRDTGEASSIARRYGPWFKGKDGNERAKLGDYGGAWSRALKGRVVREKEEERAKYIGCYLDDTQS
RALRGVSFFDYKKMTIFRCQDNCAERGYLYGGLEFGAECYCGHKIQATNVSEAECDMECKGERGSVCGGA
NRLSVYRLQLAQESARRYGSAVFRGCFRRPDNLSLALPVTAAMLNMSVDKCVDFCTEKEYPLAALAGTAC
HCGFPTTRFPLHDREDEQLCAQKCSAEEFESCGTPSYFIVYQTQVQDNRCMDRRFLPGKSKQLIALASFP
GAGNTWARHLIELATGFYTGSYYFDGSLYNKGFKGERDHWRSGRTICIKTHESGQKEIEAFDAAILLIRN
PYKALMAEFNRKYGGHIGFAAHAHWKGKEWPEFVRNYAPWWATHTLDWLKFGKKVLVVHFEDLKQDLFVQ
LGRMVSLLGVAVREDRLLCVESQKDGNFKRSGLRKLEYDPYTADMQKTISAYIKMVDAALKGRNLTGVPD
DYYPR


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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