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Report for CCDS22643.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22643.1 Public Mus musculus 8 Cog8 23 108 98 CCDS HistoryNCBI Gene:97484Re-query CCDS DB by CCDS ID:22643.1See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 22643.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000034391.3 ENSMUSP00000034391.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000034391.3Link to Ensembl Protein Viewer:ENSMUSP00000034391.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000034391Re-query CCDS DB by Protein ID:ENSMUSP00000034391
Original member Current member EBI ENSMUST00000095517.11 ENSMUSP00000093173.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000095517.11Link to Ensembl Protein Viewer:ENSMUSP00000093173.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000095517Re-query CCDS DB by Protein ID:ENSMUSP00000093173
Original member Current member NCBI NM_139229.4 NP_631975.3 Accepted alive Link to Nucleotide Sequence:NM_139229.4Link to Protein Sequence:NP_631975.3Re-query CCDS DB by Nucleotide ID:NM_139229Re-query CCDS DB by Protein ID:NP_631975Link to BLAST:NP_631975.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_631975.3 640 Q9JJA2 640 100% 0 0

Chromosomal Locations for CCDS 22643.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 107048808 107049130 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 107050142 107050310 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 107052213 107053040 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 107054022 107054229 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 107056261 107056655 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1923 nt):
ATGGCGGCCGCTCTCCCTCTCCAGCCCTCCACGACCGCTTCGGCCACGACGACAGCCACGGCCGTCGCGC
TGGGGGAGGTGGAAGATGAGGGCCTCCTGGCGTCGCTATTCCGGGACCGCTTCCCCGAAGCTCAGTGGCG
TGAGAAGCCCGACGTGGGCCGCTACCTCCGGGAGCTGAGCGGCTCCGGGCTGGACCGGCTGCGGCGCGAA
CCCGAGCGCTTGGCGGAAGAGCGGGCCCAGCGGCTGCAGCAGACGCGCGACCTGGCTTTCGCCAACTACA
AGACGTTCATTCGCGGGGCCGAGTGCACCGAGCGCATCCACCGGCTCTTCGGCGACGTGGAGGCGTCCCT
CGGGCGCCTGCTCGACCGTCTGCCCCGCTTCCAGCAGAGCTGCAGGAACTTTGTGAAGGAAGCTGAGGAG
ATCAGCTCCAGCCGCCGCATGAACACGCTGACTCTAAACCGGCACACAGAAATCCTGGAGATTTTAGAGA
TACCCCAGCTTATGGACACGTGTGTCCGAAACAGCTATCATGAAGAGGCGCTGGAGCTTGCCGCCTATGT
ACGGCGACTGGAAAGGAAGTACTCCTCCATCCCCGTTATCCAGGGCATTGTGAATGAAGTGCGCCAGTCC
ATGCAGCTGATGCTAAGCCAGCTGATCCAACAACTGAGGACTAACATCCAGCTCCCAGCCTGCCTCCGTG
TCATAGGCTATCTTCGGCGCATGGATGTCTTCACTGAGGCTGAGTTGAGGGTGAAATTTCTTCAGGCTCG
GGATGCTTGGCTCCGCTCCATCCTGACTGCCATCCCTAATGATGATCCTTACTTCCACATCACAAAAACC
ATTGAGGCTTGCCGGGTCCATCTCTTTGATATCATCACCCAGTACCGTGCTATTTTCTCAGATGAGGACC
CCCTGCTGCCACCTGCCATGGGCGAGTACACTGTGAATGAGGGTGCCATCTTCCATGGATGGGTGCTGCA
GAAAATCTCACAGTTCCTGCAGGTGCTAGAGACTGACCTTTACCGGGGTATAGGAGGCCGCTTGGACTCT
CTGCTTGGCCAGTGCATGTACTTTGGGCTGTCCTTTAGCCGGGTGGGGGCTGATTTCCGCGGCCAGTTGG
CTCCTGTTTTCCAGAGGGTGGCAATCAGCACTTTCCAGAAAGCAGTTGAAGAAGCAGTGGAGAAATTCCA
GGATGAAATGACTTCATACACCCTCATCTCGACTGCAGCCATCCTGGGCAGCAGTAACACGCCTGCCACA
GTACCAGCCACACAACCAGGCACGCTGCAGCCACCGATGGTGCTCTTAGACTTCCCGCCTCTTGCCTGTT
TCCTCAACAACATTTTGGTTGCTTTCAATGATTTACGTCTCTGTTGCCCTGTGGCTCTAGCACAGGATGT
GACTGGGACCTTGGAAAATGCCCTTACCAAGGTAACCAAAACAATTCTGGCATTCCATCGAGCCGAAGAG
GCTGTGTTCAGCAGTGGGGAGCATGAGATCTTTGTCCAGTTCTGCACTGCCTTCCTGGAAGACCTTGTTC
CTTATTTGAACCGCTGTCTTCAAGTCCTTTTCCCACCAGCTCAGATAGCCCAGACTTTAGGCATTTCACC
CACCCAGCTCTCTAAGCACGGAAACCTTGGACACGTGAACATCAGCGCCATCCAGGAACCTCTCGCCTTT
ATTTTGCCTAAGAGAGAAACAGTTTTCTGTTTAGATGAGCAGGAGCTGGGGCCGGACCTCGTGGCCCCAG
CTCCAGAGCTCCCTGCGGAGCAGCGGAGCATGGAGCCTGTAACAGAGAAGAGGGAACCAGGGGAGCCGCT
GCCTCAGGAGCCCATGGAGGGGGAGCCGCTGCCAGCCGAGCCACCGAGTGAGGGAGGAGCCATAGGCAGT
GTCCCCTGCCCGCAGCCTGGGGAGCAGCCCTGA

Translation (640 aa):
MAAALPLQPSTTASATTTATAVALGEVEDEGLLASLFRDRFPEAQWREKPDVGRYLRELSGSGLDRLRRE
PERLAEERAQRLQQTRDLAFANYKTFIRGAECTERIHRLFGDVEASLGRLLDRLPRFQQSCRNFVKEAEE
ISSSRRMNTLTLNRHTEILEILEIPQLMDTCVRNSYHEEALELAAYVRRLERKYSSIPVIQGIVNEVRQS
MQLMLSQLIQQLRTNIQLPACLRVIGYLRRMDVFTEAELRVKFLQARDAWLRSILTAIPNDDPYFHITKT
IEACRVHLFDIITQYRAIFSDEDPLLPPAMGEYTVNEGAIFHGWVLQKISQFLQVLETDLYRGIGGRLDS
LLGQCMYFGLSFSRVGADFRGQLAPVFQRVAISTFQKAVEEAVEKFQDEMTSYTLISTAAILGSSNTPAT
VPATQPGTLQPPMVLLDFPPLACFLNNILVAFNDLRLCCPVALAQDVTGTLENALTKVTKTILAFHRAEE
AVFSSGEHEIFVQFCTAFLEDLVPYLNRCLQVLFPPAQIAQTLGISPTQLSKHGNLGHVNISAIQEPLAF
ILPKRETVFCLDEQELGPDLVAPAPELPAEQRSMEPVTEKREPGEPLPQEPMEGEPLPAEPPSEGGAIGS
VPCPQPGEQP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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