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Report for CCDS27629.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27629.1 Public Mus musculus 15 Nol12 23 108 98 CCDS HistoryNCBI Gene:97961Re-query CCDS DB by CCDS ID:27629.1See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 27629.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000138880.8 ENSMUSP00000116103.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000138880.8Link to Ensembl Protein Viewer:ENSMUSP00000116103.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000138880Re-query CCDS DB by Protein ID:ENSMUSP00000116103
Original member NCBI NM_133800.3 NP_598561.2 Updated not alive Link to Nucleotide Sequence:NM_133800.3Link to Protein Sequence:NP_598561.2Re-query CCDS DB by Nucleotide ID:NM_133800Re-query CCDS DB by Protein ID:NP_598561
Current member NCBI NM_133800.4 NP_598561.2 Accepted alive Link to Nucleotide Sequence:NM_133800.4Link to Protein Sequence:NP_598561.2Re-query CCDS DB by Nucleotide ID:NM_133800Re-query CCDS DB by Protein ID:NP_598561Link to BLAST:NP_598561.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_598561.2 217 Q8BG17 217 100% 0 0

Chromosomal Locations for CCDS 27629.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 78934990 78935075 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 78936479 78936584 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 78937134 78937182 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 78937808 78937950 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 78940066 78940166 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 78940460 78940628 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (654 nt):
ATGGGCCGCAACAAGAAGAAGAAGAAAAGAGATGGAGACGACCGGCGGCCCCGGCTCGTTCTCAACTTTG
ATGAAGAGAAGCGGCGGGAGTACCTGACAGGCTTCCACAAGCGGAAGGTAGAGCGCAAGAAGGCAGCCAT
TGAAGAGATAAAGCAGCGGCTTAAGCAAGAGCAGAAGAAACTTCGGGAAGAGCGCCACCAGGAGTACCTG
AAGATGCTGGCAGAAAGAGAGGAAGCACTGGAGGAGGCAGATGAGCTGGAGCGGCTAGTGACAGCGAAGA
CAGAGTCGGTGCAGTATGACCACCCCAATCACACAGTCACTGTGACCACCATCAGTGACCTGGACCTCTC
AGGGGCCCGGCTGCTAGGTCTGCCCCTGCCTGAGCAAGGGGACCAGGATGGGTCCCAGGAAGAGGAGATG
TCATCCCTGGAAAAGCCAACAAAAGCCTTGCCCAGGAAGTCCAAAGATCCCCTGCTCTCTCAGCGCATCT
CCTCCCTCACAGCTACACTGCACGCACACAGTCGGAAGAAGGTCAAGAGGAAACACCCTCGGCGGGCACA
GGACTCCACCAAGAAACCTCCAAGTGCCACACGTACCAGCAAGACCCAGCGCCGCCGTCGGATGACTGGA
AAAGCCAGGCACAACGGGGAGTGA

Translation (217 aa):
MGRNKKKKKRDGDDRRPRLVLNFDEEKRREYLTGFHKRKVERKKAAIEEIKQRLKQEQKKLREERHQEYL
KMLAEREEALEEADELERLVTAKTESVQYDHPNHTVTVTTISDLDLSGARLLGLPLPEQGDQDGSQEEEM
SSLEKPTKALPRKSKDPLLSQRISSLTATLHAHSRKKVKRKHPRRAQDSTKKPPSATRTSKTQRRRRMTG
KARHNGE


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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