NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS3680.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
3680.1 Public Homo sapiens 4 RPL34 24 110 108 CCDS HistoryNCBI Gene:6164Re-query CCDS DB by CCDS ID:3680.1Re-query CCDS DB by GeneID:6164See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 3680.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000394665.5 ENSP00000378160.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000394665.5Link to Ensembl Protein Viewer:ENSP00000378160.1Re-query CCDS DB by Nucleotide ID:ENST00000394665Re-query CCDS DB by Protein ID:ENSP00000378160
Original member Current member EBI ENST00000394667.8 ENSP00000378162.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000394667.8Link to Ensembl Protein Viewer:ENSP00000378162.3Re-query CCDS DB by Nucleotide ID:ENST00000394667Re-query CCDS DB by Protein ID:ENSP00000378162
Original member Current member EBI ENST00000394668.2 ENSP00000378163.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000394668.2Link to Ensembl Protein Viewer:ENSP00000378163.2Re-query CCDS DB by Nucleotide ID:ENST00000394668Re-query CCDS DB by Protein ID:ENSP00000378163
Original member Current member EBI ENST00000506397.5 ENSP00000423316.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000506397.5Link to Ensembl Protein Viewer:ENSP00000423316.1Re-query CCDS DB by Nucleotide ID:ENST00000506397Re-query CCDS DB by Protein ID:ENSP00000423316
Original member Current member EBI ENST00000502534.5 ENSP00000423983.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000502534.5Link to Ensembl Protein Viewer:ENSP00000423983.1Re-query CCDS DB by Nucleotide ID:ENST00000502534Re-query CCDS DB by Protein ID:ENSP00000423983
Original member Current member NCBI NM_000995.5 NP_000986.2 Accepted alive Link to Nucleotide Sequence:NM_000995.5Link to Protein Sequence:NP_000986.2Re-query CCDS DB by Nucleotide ID:NM_000995Re-query CCDS DB by Protein ID:NP_000986Link to BLAST:NP_000986.2
Original member Current member NCBI NM_001319232.2 NP_001306161.1 Accepted alive Link to Nucleotide Sequence:NM_001319232.2Link to Protein Sequence:NP_001306161.1Re-query CCDS DB by Nucleotide ID:NM_001319232Re-query CCDS DB by Protein ID:NP_001306161Link to BLAST:NP_001306161.1
Original member Current member NCBI NM_001319234.1 NP_001306163.1 Accepted alive Link to Nucleotide Sequence:NM_001319234.1Link to Protein Sequence:NP_001306163.1Re-query CCDS DB by Nucleotide ID:NM_001319234Re-query CCDS DB by Protein ID:NP_001306163Link to BLAST:NP_001306163.1
Original member Current member NCBI NM_001319235.2 NP_001306164.1 Accepted alive Link to Nucleotide Sequence:NM_001319235.2Link to Protein Sequence:NP_001306164.1Re-query CCDS DB by Nucleotide ID:NM_001319235Re-query CCDS DB by Protein ID:NP_001306164Link to BLAST:NP_001306164.1
Original member Current member NCBI NM_001319236.2 NP_001306165.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001319236.2Link to Protein Sequence:NP_001306165.1Re-query CCDS DB by Nucleotide ID:NM_001319236Re-query CCDS DB by Protein ID:NP_001306165Link to BLAST:NP_001306165.1
Original member Current member NCBI NM_033625.4 NP_296374.1 Accepted alive Link to Nucleotide Sequence:NM_033625.4Link to Protein Sequence:NP_296374.1Re-query CCDS DB by Nucleotide ID:NM_033625Re-query CCDS DB by Protein ID:NP_296374Link to BLAST:NP_296374.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_000986.2 117 P49207 117 100% 0 0
NP_001306161.1 117 P49207 117 100% 0 0
NP_001306163.1 117 P49207 117 100% 0 0
NP_001306164.1 117 P49207 117 100% 0 0
NP_001306165.1 117 P49207 117 100% 0 0
NP_296374.1 117 P49207 117 100% 0 0

Chromosomal Locations for CCDS 3680.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 108621960 108622024 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 108622105 108622204 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 108622515 108622618 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 108625128 108625212 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (354 nt):
ATGGTCCAGCGTTTGACATACCGACGTAGGCTTTCCTACAATACAGCCTCTAACAAAACTAGGCTGTCCC
GAACCCCTGGTAATAGAATTGTTTACCTTTATACCAAGAAGGTTGGGAAAGCACCAAAATCTGCATGTGG
TGTGTGCCCAGGCAGACTTCGAGGGGTTCGTGCTGTAAGACCTAAAGTTCTTATGAGATTGTCCAAAACA
AAGAAACATGTCAGCAGGGCCTATGGTGGTTCCATGTGTGCTAAATGTGTTCGTGACAGGATCAAGCGTG
CTTTCCTTATCGAGGAGCAGAAAATCGTTGTGAAAGTGTTGAAGGCACAAGCACAGAGTCAGAAAGCTAA
ATAA

Translation (117 aa):
MVQRLTYRRRLSYNTASNKTRLSRTPGNRIVYLYTKKVGKAPKSACGVCPGRLRGVRAVRPKVLMRLSKT
KKHVSRAYGGSMCAKCVRDRIKRAFLIEEQKIVVKVLKAQAQSQKAK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH