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Report for CCDS10081.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
10081.1 Public Homo sapiens 15 EHD4 24 110 108 CCDS HistoryNCBI Gene:30844Re-query CCDS DB by CCDS ID:10081.1Re-query CCDS DB by GeneID:30844See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 10081.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000220325.9 ENSP00000220325.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000220325.9Link to Ensembl Protein Viewer:ENSP00000220325.4Re-query CCDS DB by Nucleotide ID:ENST00000220325Re-query CCDS DB by Protein ID:ENSP00000220325
Original member Current member NCBI NM_139265.4 NP_644670.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_139265.4Link to Protein Sequence:NP_644670.1Re-query CCDS DB by Nucleotide ID:NM_139265Re-query CCDS DB by Protein ID:NP_644670Link to BLAST:NP_644670.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_644670.1 541 Q9H223 541 100% 0 0

Chromosomal Locations for CCDS 10081.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 15 (NC_000015.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 41900645 41901181 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 41909699 41909863 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 41919210 41919622 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 41943067 41943164 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 41953764 41953940 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 41972259 41972494 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1626 nt):
ATGTTCAGCTGGATGGGGCGGCAGGCGGGCGGGCGCGAACGCGCTGGCGGCGCGGACGCGGTGCAGACGG
TGACGGGCGGGCTGCGCTCGCTCTACCTGCGCAAGGTGCTGCCGCTGGAGGAGGCGTACCGCTTCCACGA
GTTCCACTCGCCTGCGCTGGAGGACGCCGACTTCGAGAACAAGCCCATGATCCTGCTGGTGGGCCAGTAC
AGCACCGGCAAGACCACCTTCATCAGATACCTACTGGAGCAGGATTTCCCAGGCATGAGGATTGGTCCGG
AGCCCACCACAGACTCCTTCATCGCCGTGATGTATGGAGAGACTGAGGGCAGCACCCCAGGGAATGCTTT
AGTCGTGGACCCCAAAAAGCCGTTTAGAAAGCTCAGTCGCTTTGGAAACGCTTTCCTGAATCGATTCATG
TGCTCACAGCTCCCCAATCAGGTCCTGAAGAGCATCAGCGTCATCGACAGCCCCGGCATCCTTTCTGGGG
AGAAGCAGCGCATCAGCCGAGGCTATGACTTCTGCCAGGTCCTGCAGTGGTTTGCCGAGAGGGTGGACAG
GATCATCCTGCTCTTTGACGCTCACAAGCTGGACATCTCAGATGAATTCTCAGAGGCCATCAAGGCCTTC
CGGGGCCAGGACGACAAGATCCGTGTCGTGCTGAACAAGGCCGACCAAGTGGACACGCAGCAGCTGATGC
GGGTCTACGGGGCCCTCATGTGGTCCCTAGGCAAGGTCATCAACACGCCCGAGGTACTGCGCGTCTACAT
TGGCTCCTTCTGGGCGCAGCCCCTGCAGAACACGGACAACCGCCGGCTCTTCGAGGCTGAGGCCCAGGAC
CTCTTTAGAGACATCCAGAGCCTCCCCCAGAAGGCAGCGGTGCGCAAGCTCAACGACCTCATCAAGCGAG
CGAGGCTGGCCAAGGTGCATGCCTACATCATCAGCTACCTGAAGAAGGAGATGCCAAGTGTATTTGGAAA
GGAAAACAAGAAGAGAGAGCTTATCAGCAGGCTACCGGAAATCTACATTCAGCTACAGCGAGAATACCAG
ATTTCTGCAGGGGACTTCCCTGAGGTCAAGGCTATGCAGGAACAGCTTGAGAACTATGACTTCACCAAAT
TCCACTCGCTGAAGCCCAAGCTGATCGAGGCAGTGGACAACATGCTGAGCAACAAGATCTCGCCCCTCAT
GAACCTCATCAGCCAGGAGGAGACGAGCACGCCCACGCAGCTGGTGCAGGGCGGCGCCTTCGATGGCACC
ACCGAGGGCCCCTTCAACCAGGGCTACGGGGAGGGTGCCAAGGAGGGCGCCGACGAGGAGGAGTGGGTCG
TGGCCAAAGACAAGCCCGTCTACGACGAGCTCTTCTACACTCTGTCGCCCATCAATGGCAAGATATCAGG
TGTCAACGCCAAGAAGGAGATGGTGACCTCCAAGCTGCCCAACAGCGTCCTGGGCAAGATCTGGAAGCTG
GCCGACTGCGACTGCGACGGCATGCTTGATGAGGAGGAGTTCGCGCTGGCCAAGCACCTCATCAAGATCA
AGCTCGACGGCTACGAGCTGCCCAGCAGCCTGCCCCCCCACCTCGTGCCCCCCTCGCACAGGAAGTCCCT
GCCCAAGGCCGACTGA

Translation (541 aa):
MFSWMGRQAGGRERAGGADAVQTVTGGLRSLYLRKVLPLEEAYRFHEFHSPALEDADFENKPMILLVGQY
STGKTTFIRYLLEQDFPGMRIGPEPTTDSFIAVMYGETEGSTPGNALVVDPKKPFRKLSRFGNAFLNRFM
CSQLPNQVLKSISVIDSPGILSGEKQRISRGYDFCQVLQWFAERVDRIILLFDAHKLDISDEFSEAIKAF
RGQDDKIRVVLNKADQVDTQQLMRVYGALMWSLGKVINTPEVLRVYIGSFWAQPLQNTDNRRLFEAEAQD
LFRDIQSLPQKAAVRKLNDLIKRARLAKVHAYIISYLKKEMPSVFGKENKKRELISRLPEIYIQLQREYQ
ISAGDFPEVKAMQEQLENYDFTKFHSLKPKLIEAVDNMLSNKISPLMNLISQEETSTPTQLVQGGAFDGT
TEGPFNQGYGEGAKEGADEEEWVVAKDKPVYDELFYTLSPINGKISGVNAKKEMVTSKLPNSVLGKIWKL
ADCDCDGMLDEEEFALAKHLIKIKLDGYELPSSLPPHLVPPSHRKSLPKAD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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