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Report for CCDS10468.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
10468.2 Public Homo sapiens 16 TEDC2 24 110 108 CCDS HistoryNCBI Gene:80178Re-query CCDS DB by CCDS ID:10468.2Re-query CCDS DB by GeneID:80178See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 10468.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000361837.9 ENSP00000355022.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000361837.9Link to Ensembl Protein Viewer:ENSP00000355022.4Re-query CCDS DB by Nucleotide ID:ENST00000361837Re-query CCDS DB by Protein ID:ENSP00000355022
Original member Current member NCBI NM_025108.3 NP_079384.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_025108.3Link to Protein Sequence:NP_079384.2Re-query CCDS DB by Nucleotide ID:NM_025108Re-query CCDS DB by Protein ID:NP_079384Link to BLAST:NP_079384.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_079384.2 433 Q7L2K0-1 433 100% 0 0

Chromosomal Locations for CCDS 10468.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 16 (NC_000016.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 2460145 2460170 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 2460283 2460381 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 2460623 2460693 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 2460816 2461224 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 2461747 2461800 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 2462149 2462239 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 2462415 2462526 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 2462631 2462732 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 2464039 2464229 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 2464522 2464668 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1302 nt):
ATGCTGCCGGCGGGCTGCTCGCGCCGGCTGGTGGCCGAGCTGCAGGGCGCCCTGGACGCCTGCGCACAGC
GACAATTGCAATTGGAGCAGAGCCTGCGCGTTTGCCGTCGGCTGCTGCATGCCTGGGAACCAACTGGGAC
CCGGGCTTTGAAGCCACCTCCAGGGCCAGAAACTAATGGAGAGGACCCCCTTCCAGCATGCACACCCAGT
CCACAAGACCTCAAAGAGTTGGAGTTTCTGACCCAGGCACTGGAGAAGGCTGTACGAGTTCGAAGAGGCA
TCACTAAGGCCGGAGAGAGAGACAAGGCCCCCAGCCTGAAATCTAGGTCCATTGTCACCTCTTCTGGCAC
GACAGCCTCCGCCCCACCGCATTCCCCAGGCCAAGCTGGTGGCCATGCTTCAGACACGAGACCCACCAAG
GGCCTCCGCCAGACCACGGTGCCTGCCAAGGGCCACCCTGAGCGCCGGCTGCTGTCAGTGGGGGATGGGA
CCCGTGTTGGGATGGGAGCCCGAACCCCCAGGCCTGGGGCGGGCCTCAGGGACCAGCAAATGGCCCCATC
CGCTGCTCCTCAGGCCCCAGAAGCCTTCACACTCAAGGAGAAGGGGCACCTGCTGCGGCTGCCTGCGGCA
TTCAGGAAAGCAGCTTCCCAGAACTCGAGCCTGTGGGCCCAGCTCAGTTCCACACAGACCAGTGATTCCA
CGGATGCCGCCGCTGCCAAAACCCAGTTCCTCCAGAACATGCAGACAGCTTCAGGCGGGCCCCAGCCCAG
GCTCAGTGCTGTGGAGGTGGAGGCGGAGGCGGGGCGCCTGCGGAAGGCCTGCTCGCTGCTGAGACTGCGC
ATGAGGGAGGAGCTCTCGGCAGCCCCCATGGACTGGATGCAGGAGTACCGCTGCCTGCTCACGCTGGAGG
GGCTGCAGGCCATGGTGGGCCAGTGTCTGCACAGGCTGCAGGAGCTGCGTGCAGCGGTGGCGGAACAGCC
ACCAAGACCATGTCCTGTGGGGAGGCCCCCCGGAGCCTCGCCGTCCTGTGGGGGTAGAGCGGAGCCTGCA
TGGAGCCCCCAGCTGCTTGTCTACTCCAGCACCCAGGAGCTGCAGACCCTGGCGGCCCTCAAGCTGCGAG
TGGCTGTGCTGGACCAGCAGATCCACTTGGAAAAGGTCCTGATGGCTGAACTCCTCCCCCTGGTAAGCGC
TGCACAGCCGCAGGGGCCGCCCTGGCTGGCCCTGTGCCGGGCTGTGCACAGCCTGCTCTGCGAGGGAGGA
GCACGTGTCCTTACCATCCTGCGGGATGAACCTGCAGTCTGA

Translation (433 aa):
MLPAGCSRRLVAELQGALDACAQRQLQLEQSLRVCRRLLHAWEPTGTRALKPPPGPETNGEDPLPACTPS
PQDLKELEFLTQALEKAVRVRRGITKAGERDKAPSLKSRSIVTSSGTTASAPPHSPGQAGGHASDTRPTK
GLRQTTVPAKGHPERRLLSVGDGTRVGMGARTPRPGAGLRDQQMAPSAAPQAPEAFTLKEKGHLLRLPAA
FRKAASQNSSLWAQLSSTQTSDSTDAAAAKTQFLQNMQTASGGPQPRLSAVEVEAEAGRLRKACSLLRLR
MREELSAAPMDWMQEYRCLLTLEGLQAMVGQCLHRLQELRAAVAEQPPRPCPVGRPPGASPSCGGRAEPA
WSPQLLVYSSTQELQTLAALKLRVAVLDQQIHLEKVLMAELLPLVSAAQPQGPPWLALCRAVHSLLCEGG
ARVLTILRDEPAV


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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