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Report for CCDS1123.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
1123.1 Public Homo sapiens 1 RIT1 24 110 108 CCDS HistoryNCBI Gene:6016Re-query CCDS DB by CCDS ID:1123.1Re-query CCDS DB by GeneID:6016See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 1123.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000368323.8 ENSP00000357306.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000368323.8Link to Ensembl Protein Viewer:ENSP00000357306.3Re-query CCDS DB by Nucleotide ID:ENST00000368323Re-query CCDS DB by Protein ID:ENSP00000357306
Original member Current member NCBI NM_006912.6 NP_008843.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_006912.6Link to Protein Sequence:NP_008843.1Re-query CCDS DB by Nucleotide ID:NM_006912Re-query CCDS DB by Protein ID:NP_008843Link to BLAST:NP_008843.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_008843.1 219 Q92963-1 219 100% 0 0

Chromosomal Locations for CCDS 1123.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 155900388 155900618 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 155904311 155904502 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 155904731 155904804 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 155910450 155910506 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 155910656 155910761 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (660 nt):
ATGGATTCTGGAACTCGCCCAGTTGGTAGCTGCTGTAGCAGCCCCGCTGGGCTCTCACGGGAGTACAAAC
TAGTGATGCTGGGTGCTGGTGGTGTAGGGAAGAGTGCCATGACCATGCAGTTCATCAGCCACCGATTCCC
AGAAGATCATGATCCCACCATTGAAGATGCTTATAAGATCAGGATCCGTATTGATGATGAGCCTGCCAAT
CTGGACATTTTGGATACAGCTGGACAGGCAGAGTTTACAGCCATGCGGGACCAGTATATGAGGGCAGGAG
AAGGGTTTATCATCTGTTACTCTATCACGGATCGTCGAAGTTTCCATGAAGTTCGTGAGTTTAAACAGCT
TATTTATCGAGTCCGACGTACTGACGATACACCTGTGGTTCTTGTGGGAAACAAGTCAGACCTCAAACAG
CTAAGACAGGTCACCAAGGAAGAAGGATTGGCCTTGGCCCGAGAATTCAGCTGTCCCTTTTTTGAGACAT
CTGCTGCATACCGCTACTATATTGATGATGTTTTCCATGCCCTTGTACGGGAGATACGTAGGAAAGAAAA
GGAGGCAGTACTGGCCATGGAGAAAAAATCTAAGCCCAAAAACAGTGTATGGAAGAGGCTAAAATCACCA
TTCCGGAAGAAGAAAGATTCAGTAACTTGA

Translation (219 aa):
MDSGTRPVGSCCSSPAGLSREYKLVMLGAGGVGKSAMTMQFISHRFPEDHDPTIEDAYKIRIRIDDEPAN
LDILDTAGQAEFTAMRDQYMRAGEGFIICYSITDRRSFHEVREFKQLIYRVRRTDDTPVVLVGNKSDLKQ
LRQVTKEEGLALAREFSCPFFETSAAYRYYIDDVFHALVREIRRKEKEAVLAMEKKSKPKNSVWKRLKSP
FRKKKDSVT


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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