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Report for CCDS11316.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
11316.1 Public Homo sapiens 17 LHX1 24 110 108 CCDS HistoryNCBI Gene:3975Re-query CCDS DB by CCDS ID:11316.1Re-query CCDS DB by GeneID:3975See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 11316.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000614239.1 ENSP00000477829.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000614239.1Link to Ensembl Protein Viewer:ENSP00000477829.1Re-query CCDS DB by Nucleotide ID:ENST00000614239Re-query CCDS DB by Protein ID:ENSP00000477829
Original member Current member NCBI NM_005568.5 NP_005559.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_005568.5Link to Protein Sequence:NP_005559.2Re-query CCDS DB by Nucleotide ID:NM_005568Re-query CCDS DB by Protein ID:NP_005559Link to BLAST:NP_005559.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_005559.2 406 P48742 406 100% 0 0

Chromosomal Locations for CCDS 11316.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 36938198 36938367 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 36940290 36940516 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 36940610 36940887 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 36942200 36942365 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 36942752 36943131 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1221 nt):
ATGGTTCACTGTGCCGGCTGCAAAAGGCCCATCCTGGACCGCTTTCTCTTGAACGTGCTGGACAGGGCCT
GGCACGTCAAGTGCGTCCAGTGCTGTGAATGTAAATGCAACCTGACCGAGAAGTGCTTCTCCAGGGAAGG
CAAACTCTACTGCAAGAACGACTTCTTCCGGTGTTTCGGTACCAAATGCGCAGGCTGCGCTCAGGGCATC
TCCCCTAGCGACCTGGTGCGGAGAGCGCGGAGCAAAGTGTTTCACCTGAACTGCTTCACCTGCATGATGT
GTAACAAGCAGCTCTCCACTGGCGAGGAACTCTACATCATCGACGAGAATAAGTTCGTCTGCAAAGAGGA
TTACCTAAGTAACAGCAGTGTTGCCAAAGAGAACAGCCTTCACTCGGCCACCACGGGCAGTGACCCCAGT
TTGTCTCCGGATTCCCAAGACCCGTCGCAGGACGACGCCAAGGACTCGGAGAGCGCCAACGTGTCGGACA
AGGAAGCGGGTAGCAACGAGAATGACGACCAGAACCTGGGCGCCAAGCGGCGGGGACCGCGCACCACCAT
CAAAGCCAAGCAGCTGGAGACGCTGAAGGCCGCCTTCGCTGCTACACCCAAGCCCACCCGCCACATCCGC
GAGCAGCTGGCGCAGGAGACCGGCCTCAACATGCGCGTCATTCAGGTCTGGTTCCAGAACCGGCGCTCCA
AGGAGCGGAGGATGAAGCAGCTGAGCGCCCTGGGCGCCCGGCGCCACGCCTTCTTCCGCAGTCCGCGCCG
GATGCGGCCGCTGGTGGACCGCCTGGAGCCGGGCGAGCTCATCCCCAATGGTCCCTTCTCCTTCTACGGA
GATTACCAGAGCGAGTACTACGGGCCCGGGGGCAACTACGACTTCTTCCCGCAAGGCCCCCCGTCCTCGC
AGGCCCAGACACCAGTGGACCTACCCTTCGTGCCGTCATCTGGGCCGTCCGGGACGCCCCTGGGTGGCCT
GGAGCACCCGCTGCCGGGCCACCACCCGTCGAGCGAGGCGCAGCGGTTTACCGACATCCTGGCGCACCCA
CCCGGGGACTCGCCCAGCCCCGAGCCCAGCCTGCCCGGGCCTCTGCACTCCATGTCGGCCGAGGTCTTCG
GACCCAGCCCGCCCTTCTCGTCGCTGTCGGTCAACGGTGGGGCGAGCTACGGAAACCACCTGTCCCACCC
CCCCGAAATGAACGAGGCGGCCGTGTGGTAG

Translation (406 aa):
MVHCAGCKRPILDRFLLNVLDRAWHVKCVQCCECKCNLTEKCFSREGKLYCKNDFFRCFGTKCAGCAQGI
SPSDLVRRARSKVFHLNCFTCMMCNKQLSTGEELYIIDENKFVCKEDYLSNSSVAKENSLHSATTGSDPS
LSPDSQDPSQDDAKDSESANVSDKEAGSNENDDQNLGAKRRGPRTTIKAKQLETLKAAFAATPKPTRHIR
EQLAQETGLNMRVIQVWFQNRRSKERRMKQLSALGARRHAFFRSPRRMRPLVDRLEPGELIPNGPFSFYG
DYQSEYYGPGGNYDFFPQGPPSSQAQTPVDLPFVPSSGPSGTPLGGLEHPLPGHHPSSEAQRFTDILAHP
PGDSPSPEPSLPGPLHSMSAEVFGPSPPFSSLSVNGGASYGNHLSHPPEMNEAAVW


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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