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Report for CCDS1137.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
1137.1 Public Homo sapiens 1 SMG5 24 110 108 CCDS HistoryNCBI Gene:23381Re-query CCDS DB by CCDS ID:1137.1Re-query CCDS DB by GeneID:23381See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 1137.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000361813.5 ENSP00000355261.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000361813.5Link to Ensembl Protein Viewer:ENSP00000355261.5Re-query CCDS DB by Nucleotide ID:ENST00000361813Re-query CCDS DB by Protein ID:ENSP00000355261
Original member Current member NCBI NM_015327.3 NP_056142.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_015327.3Link to Protein Sequence:NP_056142.2Re-query CCDS DB by Nucleotide ID:NM_015327Re-query CCDS DB by Protein ID:NP_056142Link to BLAST:NP_056142.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_056142.2 1016 Q9UPR3 1016 100% 0 0

Chromosomal Locations for CCDS 1137.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 156250587 156250670 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 156250858 156250996 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 156251403 156251477 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 156252414 156252504 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 156252919 156253078 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 156253449 156253508 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 156259005 156259163 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 156260451 156260626 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 156261333 156261408 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 156263395 156263570 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 156265781 156266380 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 156266541 156266678 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 156267470 156267678 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 156268115 156268183 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 156268290 156268415 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 156272320 156272398 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 156273361 156273450 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 156274597 156274686 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 156277085 156277241 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 156277925 156278048 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 156278936 156279034 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 156282607 156282680 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3051 nt):
ATGAGCCAAGGCCCCCCCACAGGGGAGAGCAGCGAGCCCGAAGCAAAAGTCCTCCACACTAAGCGGCTTT
ACCGGGCTGTGGTGGAGGCTGTGCATCGACTTGACCTCATCCTTTGCAACAAAACTGCTTATCAAGAAGT
ATTCAAACCAGAAAACATTAGCCTGAGGAACAAGCTGCGTGAGCTCTGCGTCAAGCTTATGTTCCTGCAC
CCAGTGGACTATGGGAGAAAGGCTGAGGAGCTGCTGTGGAGAAAGGTATACTATGAAGTTATCCAGCTTA
TCAAGACTAACAAAAAGCACATCCACAGCCGGAGCACTTTGGAATGTGCCTACAGGACGCACCTGGTTGC
TGGTATTGGCTTCTACCAGCATCTCCTTCTCTATATCCAGTCCCACTACCAGCTGGAACTGCAGTGCTGC
ATCGACTGGACCCATGTCACTGACCCCCTCATAGGATGCAAGAAGCCAGTGTCTGCCTCAGGGAAGGAGA
TGGATTGGGCACAGATGGCATGTCACCGATGTCTGGTGTATCTGGGGGATTTGTCCCGATATCAGAATGA
ATTAGCTGGCGTAGATACCGAGCTGCTAGCCGAGAGATTTTACTACCAAGCCCTGTCAGTAGCTCCTCAG
ATTGGAATGCCCTTCAATCAGCTGGGCACCCTGGCAGGCAGCAAGTACTATAATGTGGAAGCCATGTATT
GCTACCTGCGCTGCATCCAGTCAGAAGTGTCCTTTGAGGGAGCCTATGGGAACCTCAAGCGGCTGTATGA
CAAGGCAGCCAAAATGTACCACCAACTGAAGAAGTGTGAGACTCGGAAACTGTCTCCTGGCAAAAAGCGA
TGTAAAGACATTAAAAGGTTGCTAGTGAACTTTATGTATCTGCAAAGCCTCCTACAGCCCAAAAGCAGCT
CCGTGGACTCAGAGCTGACCTCACTTTGCCAGTCAGTCCTGGAGGACTTCAACCTCTGCCTCTTCTACCT
GCCCTCCTCACCCAACCTCAGCCTGGCCAGTGAGGATGAGGAGGAGTATGAGAGTGGATATGCTTTCCTC
CCGGACCTTCTCATCTTTCAAATGGTCATCATCTGCCTTATGTGTGTGCACAGCTTGGAGAGAGCAGGAT
CCAAGCAGTACAGTGCAGCCATTGCCTTCACCCTGGCCCTCTTTTCCCACCTCGTCAATCATGTCAACAT
ACGGCTGCAGGCTGAGCTGGAAGAGGGCGAGAATCCCGTCCCGGCATTCCAGAGTGATGGCACAGATGAA
CCAGAGTCCAAGGAACCTGTGGAGAAAGAGGAGGAGCCAGATCCTGAGCCTCCTCCTGTAACACCCCAAG
TGGGTGAGGGCAGAAAGAGCCGTAAGTTCTCTCGCCTCTCCTGTCTCCGCCGTCGCCGCCACCCACCCAA
AGTTGGTGATGACAGTGACCTGAGTGAAGGCTTTGAATCGGACTCAAGCCATGACTCAGCCCGGGCCAGT
GAGGGCTCAGACAGTGGCTCTGACAAGAGTCTTGAAGGTGGGGGAACGGCCTTTGATGCTGAAACAGACT
CGGAAATGAATAGCCAGGAGTCCCGATCAGACTTGGAAGATATGGAGGAAGAGGAGGGGACACGGTCACC
AACCCTGGAGCCCCCTCGGGGCAGATCAGAGGCTCCCGATTCCCTCAATGGCCCACTGGGCCCCAGTGAG
GCTAGCATTGCCAGCAATCTACAAGCCATGTCCACCCAGATGTTCCAGACTAAGCGCTGCTTCCGACTGG
CCCCCACCTTTAGCAACCTGCTCCTCCAGCCCACCACCAACCCTCATACCTCGGCCAGCCACAGGCCTTG
CGTCAATGGGGATGTAGACAAGCCTTCAGAGCCAGCCTCTGAGGAGGGCTCTGAGTCGGAGGGGAGTGAG
TCCAGTGGACGCTCCTGTCGGAATGAGCGCAGCATCCAGGAGAAGCTTCAGGTCCTGATGGCCGAAGGTC
TGCTTCCTGCTGTGAAAGTCTTCCTGGACTGGCTTCGGACCAACCCCGACCTCATCATCGTGTGTGCGCA
GAGCTCTCAAAGTCTGTGGAACCGCCTGTCTGTGTTGCTGAATCTGTTGCCTGCTGCTGGTGAACTCCAG
GAGTCTGGCCTGGCCTTGTGTCCTGAGGTCCAAGATCTTCTTGAAGGTTGTGAACTGCCTGACCTCCCCT
CTAGCCTTCTGCTCCCAGAGGACATGGCTCTTCGTAACCTGCCCCCGCTCCGAGCTGCCCACAGACGCTT
TAACTTTGACACGGATCGGCCCCTGCTCAGCACCTTAGAGGAGTCAGTGGTGCGCATCTGCTGCATCCGC
AGCTTTGGTCATTTCATCGCCCGCCTGCAAGGCAGCATCCTGCAGTTCAACCCAGAGGTTGGCATCTTCG
TCAGCATTGCCCAGTCTGAGCAGGAGAGCCTGCTGCAGCAGGCCCAGGCACAGTTCCGAATGGCACAGGA
GGAAGCTCGTCGGAACAGGCTCATGAGAGACATGGCTCAGCTACGACTTCAGCTCGAAGTGTCTCAGCTG
GAGGGCAGCCTGCAGCAGCCCAAGGCCCAGTCAGCCATGTCTCCCTACCTCGTCCCTGACACCCAGGCCC
TCTGCCACCATCTCCCTGTCATCCGCCAACTGGCCACCAGTGGCCGCTTCATTGTCATCATCCCAAGGAC
AGTGATCGATGGCCTGGATTTGCTGAAGAAGGAACACCCAGGGGCCCGGGATGGGATTCGGTACCTGGAG
GCAGAGTTTAAAAAAGGAAACAGGTACATTCGCTGCCAGAAAGAGGTGGGAAAGAGCTTTGAGCGGCATA
AGCTGAAGAGGCAGGATGCAGATGCCTGGACTCTCTATAAGATCCTAGACAGCTGCAAACAGCTGACTCT
GGCCCAGGGGGCAGGTGAGGAGGATCCGAGTGGCATGGTGACCATCATCACAGGCCTTCCACTGGACAAC
CCCAGCGTGCTTTCAGGCCCCATGCAGGCAGCCCTGCAGGCCGCTGCCCACGCCAGTGTGGACATCAAGA
ATGTTCTGGACTTCTACAAGCAGTGGAAGGAAATTGGTTGA

Translation (1016 aa):
MSQGPPTGESSEPEAKVLHTKRLYRAVVEAVHRLDLILCNKTAYQEVFKPENISLRNKLRELCVKLMFLH
PVDYGRKAEELLWRKVYYEVIQLIKTNKKHIHSRSTLECAYRTHLVAGIGFYQHLLLYIQSHYQLELQCC
IDWTHVTDPLIGCKKPVSASGKEMDWAQMACHRCLVYLGDLSRYQNELAGVDTELLAERFYYQALSVAPQ
IGMPFNQLGTLAGSKYYNVEAMYCYLRCIQSEVSFEGAYGNLKRLYDKAAKMYHQLKKCETRKLSPGKKR
CKDIKRLLVNFMYLQSLLQPKSSSVDSELTSLCQSVLEDFNLCLFYLPSSPNLSLASEDEEEYESGYAFL
PDLLIFQMVIICLMCVHSLERAGSKQYSAAIAFTLALFSHLVNHVNIRLQAELEEGENPVPAFQSDGTDE
PESKEPVEKEEEPDPEPPPVTPQVGEGRKSRKFSRLSCLRRRRHPPKVGDDSDLSEGFESDSSHDSARAS
EGSDSGSDKSLEGGGTAFDAETDSEMNSQESRSDLEDMEEEEGTRSPTLEPPRGRSEAPDSLNGPLGPSE
ASIASNLQAMSTQMFQTKRCFRLAPTFSNLLLQPTTNPHTSASHRPCVNGDVDKPSEPASEEGSESEGSE
SSGRSCRNERSIQEKLQVLMAEGLLPAVKVFLDWLRTNPDLIIVCAQSSQSLWNRLSVLLNLLPAAGELQ
ESGLALCPEVQDLLEGCELPDLPSSLLLPEDMALRNLPPLRAAHRRFNFDTDRPLLSTLEESVVRICCIR
SFGHFIARLQGSILQFNPEVGIFVSIAQSEQESLLQQAQAQFRMAQEEARRNRLMRDMAQLRLQLEVSQL
EGSLQQPKAQSAMSPYLVPDTQALCHHLPVIRQLATSGRFIVIIPRTVIDGLDLLKKEHPGARDGIRYLE
AEFKKGNRYIRCQKEVGKSFERHKLKRQDADAWTLYKILDSCKQLTLAQGAGEEDPSGMVTIITGLPLDN
PSVLSGPMQAALQAAAHASVDIKNVLDFYKQWKEIG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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